View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16201_low_2 (Length: 521)
Name: NF16201_low_2
Description: NF16201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16201_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Original strand, 43606871 - 43607356
Alignment:
| Q |
16 |
tgaactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggatgactactacggttaccacnnnnnnnnnnnnnnnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606871 |
tgaactgaactaaactaagagtctaagacatattcctaattcaatggctgaaactctcagggatgactactacggttaccaccagcagcagcagcagcag |
43606970 |
T |
|
| Q |
116 |
nnnaaccaacccataacattcacccaaacaagaacaaggaagggatttcatccttctacttcacaactcatagtacttgctactcttgtaccttttggag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43606971 |
---aaccaacccataacattcacccaaacaagaacaaggaagggatttcatccttctacttcacaactcatagtacttgctactcttgtaccttttggag |
43607067 |
T |
|
| Q |
216 |
caactcttctcattcttgctggtctcacactcactgccaccgttgtcggcctcgctgtcaccacccctctgttcattttcttcagccccattttgttagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607068 |
caactcttctcattcttgctggtctcacactcactgccaccgttgtcggcctcgctgtcaccacccctctgttcattttcttcagccccattttgttagc |
43607167 |
T |
|
| Q |
316 |
tgcggctgtcgtcattggtttggccatcgccggatttttgacatccggtgctttcggtattacctcgctttcttcctttgcttgggtagcatcatatctc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43607168 |
tgcggctgtcgtcattggtttggccatcgccggatttttgacatccggtgctttcggtattacctcgctttcttcctttgcttgggtagcatcatatctc |
43607267 |
T |
|
| Q |
416 |
cgtcgttcacggtttctggagaaggttaacgttaaacatcatcatcatgcaattgcaaagccgccacgtttggatgcggatgagacttt |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43607268 |
cgtcgttcacggtttctggagaaggttaacgttaaacatcatcatcatgcaattgcaaagccgccacgttttgatgcggatgagacttt |
43607356 |
T |
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