View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16201_low_3 (Length: 328)

Name: NF16201_low_3
Description: NF16201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16201_low_3
NF16201_low_3
[»] chr7 (18 HSPs)
chr7 (12-328)||(36464480-36464796)
chr7 (189-328)||(8414747-8414886)
chr7 (229-328)||(8733751-8733850)
chr7 (194-327)||(3051993-3052130)
chr7 (189-328)||(3934742-3934881)
chr7 (193-328)||(3932507-3932642)
chr7 (270-328)||(19788938-19788996)
chr7 (270-328)||(19786632-19786690)
chr7 (229-315)||(42678848-42678934)
chr7 (189-315)||(16497078-16497204)
chr7 (192-315)||(16535260-16535383)
chr7 (192-315)||(16630279-16630402)
chr7 (189-257)||(16535288-16535356)
chr7 (189-257)||(16630306-16630374)
chr7 (189-257)||(3932533-3932601)
chr7 (193-257)||(8733792-8733856)
chr7 (189-252)||(16497171-16497234)
chr7 (189-249)||(42678884-42678944)
[»] chr1 (6 HSPs)
chr1 (189-328)||(29833332-29833471)
chr1 (189-328)||(734835-734974)
chr1 (189-328)||(2404084-2404223)
chr1 (193-323)||(2416660-2416791)
chr1 (240-311)||(419213-419284)
chr1 (229-315)||(8933827-8933913)
[»] chr8 (8 HSPs)
chr8 (189-324)||(21268390-21268525)
chr8 (189-328)||(36379724-36379863)
chr8 (189-328)||(36377439-36377578)
chr8 (229-328)||(4876820-4876919)
chr8 (229-328)||(4879148-4879247)
chr8 (229-328)||(24519411-24519510)
chr8 (193-297)||(21268447-21268551)
chr8 (189-252)||(4879138-4879201)
[»] chr5 (8 HSPs)
chr5 (189-328)||(37207660-37207799)
chr5 (189-328)||(22600700-22600839)
chr5 (189-324)||(23164501-23164636)
chr5 (189-328)||(11852422-11852561)
chr5 (189-328)||(11850164-11850303)
chr5 (229-315)||(1779495-1779581)
chr5 (189-313)||(1779731-1779855)
chr5 (193-297)||(37207634-37207738)
[»] chr2 (8 HSPs)
chr2 (189-328)||(31488955-31489094)
chr2 (189-328)||(31486671-31486810)
chr2 (229-315)||(34576883-34576969)
chr2 (189-300)||(15729871-15729981)
chr2 (191-324)||(23859767-23859906)
chr2 (201-301)||(29801774-29801875)
chr2 (189-265)||(34576903-34576979)
chr2 (198-265)||(29801802-29801869)
[»] chr4 (7 HSPs)
chr4 (189-328)||(45166859-45166998)
chr4 (193-328)||(45161971-45162106)
chr4 (229-328)||(42468696-42468795)
chr4 (229-328)||(42471025-42471124)
chr4 (261-328)||(50856018-50856085)
chr4 (189-252)||(42468742-42468805)
chr4 (192-252)||(42471071-42471131)
[»] chr3 (2 HSPs)
chr3 (193-311)||(18966398-18966518)
chr3 (193-265)||(39578235-39578307)
[»] scaffold0008 (1 HSPs)
scaffold0008 (193-277)||(73069-73153)
[»] scaffold0050 (2 HSPs)
scaffold0050 (188-276)||(31439-31527)
scaffold0050 (189-276)||(29122-29209)
[»] scaffold0312 (1 HSPs)
scaffold0312 (240-311)||(11287-11358)
[»] chr6 (1 HSPs)
chr6 (261-315)||(21199149-21199203)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 36464796 - 36464480
Alignment:
Q  12 atcatcagaattagctaagcgaacctaaaaggaagtttaaaaacgttgtcgcctatatcaaaaacctgatgagtacgtaatgctcaggtctggttctcca 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36464796 atcaacagaattagctaagcgaacctaaaaggaagtttaaaaacgttgtcgcctatatcaaaaacctgatgagtacgtaatgctcaggtctggtgctcca 36464697  T
Q  112 aaatgaatgagacccctctcccttccatgaaactataccgtcaaaagcaggaataataaaagcaacgatgatgaagaagaatgatgaaaaataatatgga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464696 aaatgaatgagacccctctcccttccatgaaactataccgtcaaaagcaggaataataaaagcaacgatgatgaagaagaatgatgaaaaataatatgga 36464597  T
Q  212 agactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactaga 311  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  36464596 agactctagaatactagagaataatgtggaagtctctagaacactaaataataatatagaagtctctagaatactagggaataataaggaagctactaga 36464497  T
Q  312 cactactaaataagcac 328  Q
    |||||||||||||||||    
T  36464496 cactactaaataagcac 36464480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 8414886 - 8414747
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||    
T  8414886 agaatgatgaagaataatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctctagaatactag 8414787  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  8414786 ggaataataaggaaactactagacactactaaataagcac 8414747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 8733850 - 8733751
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8733850 agaataatatggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaataagcac 8733751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 3051993 - 3052130
Alignment:
Q  194 gatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag----g 289  Q
    |||||| ||||||||||||||||||||||||  |||||||||||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||         
T  3051993 gatgaagaataatatggaagactctagaatactagagaataatgtcgaagtctctataacactaaagaataatatagaagtctctagaatactagataat 3052092  T
Q  290 gaataataaggatgctactagacactactaaataagca 327  Q
     ||||||||||| |||||||||||||||||||||||||    
T  3052093 aaataataaggaagctactagacactactaaataagca 3052130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 3934742 - 3934881
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||| |||||||||     |||||||| ||||||||||||||| |||||| ||||| || |||| ||||||||||||||    
T  3934742 agaatgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactag 3934841  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  3934842 ggaataataaggaagctactagatactactaaataagcac 3934881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 3932507 - 3932642
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaa 292  Q
    ||||||| ||||||||||||| |||||||||     |||||||| ||||||||||||||| |||||| ||||| || |||| ||||||||||||||||||    
T  3932507 tgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaa 3932606  T
Q  293 taataaggatgctactagacactactaaataagcac 328  Q
    ||||||||| ||||||||| ||||||||||||||||    
T  3932607 taataaggaagctactagatactactaaataagcac 3932642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 19788938 - 19788996
Alignment:
Q  270 gaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19788938 gaagtctctagaatactagggaataataaggaagctactagacactactaaataagcac 19788996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 19786632 - 19786690
Alignment:
Q  270 gaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  19786632 gaagtctctagaatattagggaataataaggaagctactagacactactaaataagcac 19786690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 42678934 - 42678848
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact 315  Q
    |||||||| ||||||| ||||||| |||||| ||||| || |||||||||| ||||||| ||||||||||||| |||||||||||||    
T  42678934 agaataatatggaagtttctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacact 42678848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 315
Target Start/End: Complemental strand, 16497204 - 16497078
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaat-agcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatacta 287  Q
    |||||||| || ||||||||||||| ||||||||| | || |||||||| |||| | |||||||| | |||| |||||  | ||||| ||||||||||||    
T  16497204 agaatgatcaagaataatatggaagtctctagaatgatca-agaataatatggatgcctctagaataataaagaataatgtggaagtttctagaatacta 16497106  T
Q  288 gggaataataaggatgctactagacact 315  Q
     ||||||||||||| |||||||||||||    
T  16497105 tggaataataaggaagctactagacact 16497078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 16535383 - 16535260
Alignment:
Q  192 atgatgaaaaataatatggaagactctagaat-agcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactaggg 290  Q
    ||||| || ||||||||||||| || |||||| | || |||||||| |||||| |||||||| | |||| |||||  | |||||||||||||||||| ||    
T  16535383 atgatcaagaataatatggaagtctatagaatgatca-agaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatgg 16535285  T
Q  291 aataataaggatgctactagacact 315  Q
    |||||||| || |||||||||||||    
T  16535284 aataataaagaagctactagacact 16535260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 16630279 - 16630402
Alignment:
Q  192 atgatgaaaaataatatggaagactctagaat-agcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactaggg 290  Q
    ||||| || ||||||||||||| || |||||| | || |||||||| |||||| |||||||| | |||| |||||  | |||||||||||||||||| ||    
T  16630279 atgatcaagaataatatggaagtctatagaatgatca-agaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatgg 16630377  T
Q  291 aataataaggatgctactagacact 315  Q
    |||||||| || |||||||||||||    
T  16630378 aataataaagaagctactagacact 16630402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 16535356 - 16535288
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacacta 257  Q
    |||||||| || ||||||||||||| ||||||||||  | |||||||||||||||||||||||| ||||    
T  16535356 agaatgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatacta 16535288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 16630306 - 16630374
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacacta 257  Q
    |||||||| || ||||||||||||| ||||||||||  | |||||||||||||||||||||||| ||||    
T  16630306 agaatgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatacta 16630374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 3932533 - 3932601
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacacta 257  Q
    ||||||||||| ||||||||||||| |||||||| |  | |||||||| |||||| |||||||| ||||    
T  3932533 agaatgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatacta 3932601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 8733856 - 8733792
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacacta 257  Q
    ||||||| ||||||||||||| |||||||| |  | |||||||| | ||||||||||||| ||||    
T  8733856 tgatgaagaataatatggaagtctctagaacactaaagaataatatagaagtctctagaatacta 8733792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 16497234 - 16497171
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaat-agcagagaataatgtggaagtctctagaa 252  Q
    |||||||| || ||||||||||||| ||||||||| | || |||||||| |||||||||||||||    
T  16497234 agaatgatcaagaataatatggaagtctctagaatgatca-agaataatatggaagtctctagaa 16497171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 42678944 - 42678884
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctcta 249  Q
    ||||||||||| |||||||||||||  ||||||| |  | |||||||| ||||||||||||    
T  42678944 agaatgatgaagaataatatggaagtttctagaaaactaaagaataatatggaagtctcta 42678884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 29833471 - 29833332
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  29833471 agaatgatgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactag 29833372  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  29833371 ggaataataaggaagctactagacactactaaataagcac 29833332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 734974 - 734835
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||||||||||||||  || ||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  734974 agaatgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctttagaagactaaagaataatatagaagtctctagaatactag 734875  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  734874 ggaataacaaggaagctactagacactactaaataagcac 734835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 2404223 - 2404084
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||| || ||||||||||| |||  |||||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||    
T  2404223 agaatgatgaagaataaaatagaagactctaggatactagagaataatgtggaaatctctagaagactaaagaataatatagaagtctctagaatactag 2404124  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  2404123 ggaataataaggaagctactagatactactaaataagcac 2404084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 193 - 323
Target Start/End: Complemental strand, 2416791 - 2416660
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctct-agaacactaaataataaaatagaagtctctagaatactaggga 291  Q
    ||||||| ||||| || ||||||||||| ||| ||||||||||||||||||||||| |||| |||| | ||||| |||||| ||||||||||||||||||    
T  2416791 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcagaagactacagaataatatagaactctctagaatactaggga 2416692  T
Q  292 ataataaggatgctactagacactactaaata 323  Q
    |||||||||| ||||||||| |||||||||||    
T  2416691 ataataaggaagctactagatactactaaata 2416660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 311
Target Start/End: Complemental strand, 419284 - 419213
Alignment:
Q  240 gaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactaga 311  Q
    |||||||||||||||||||| ||||| || |||||||||| |||  ||  |||||||||||| |||||||||    
T  419284 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 419213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 8933913 - 8933827
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact 315  Q
    |||||||| ||||| | |||| || |||||| || || || |||||||||| ||||||| ||||||||||||| |||| ||||||||    
T  8933913 agaataatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctattagacact 8933827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 21268525 - 21268390
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  21268525 agaatggtgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactag 21268426  T
Q  289 ggaataataaggatgctactagacactactaaataa 324  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21268425 ggaataataaggaagctactagacactactaaataa 21268390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 36379863 - 36379724
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| ||||||||||||||||||||||||  || ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  36379863 agaatggtgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactag 36379764  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  36379763 ggaataataaggaagctactagacactactaaataagcac 36379724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 36377578 - 36377439
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| ||||||||||||||||||||||||  |  ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  36377578 agaatggtgaagaataatatggaagactctagaatactaaggaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactag 36377479  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  36377478 ggaataataaggaagctactagacactactaaataagcac 36377439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 328
Target Start/End: Original strand, 4876820 - 4876919
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||| |||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  4876820 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcac 4876919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 328
Target Start/End: Original strand, 4879148 - 4879247
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||| |||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  4879148 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaataagcac 4879247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 24519510 - 24519411
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||| |||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||| ||| ||||||||||||||||    
T  24519510 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctaccagatactactaaataagcac 24519411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 21268551 - 21268447
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaa 292  Q
    ||||||| ||||||||||||| ||||||||| |   |||||||| |||||| |||||||| |||| | |||||  | ||||||||||||| ||||  |||    
T  21268551 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaa 21268452  T
Q  293 taata 297  Q
    |||||    
T  21268451 taata 21268447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 4879138 - 4879201
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaa 252  Q
    ||||||||||| ||||||||||||| ||||||||| |   |||||||| |||||| ||||||||    
T  4879138 agaatgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaa 4879201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 37207660 - 37207799
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||    
T  37207660 agaatgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataatatagaagtctgtagaatactag 37207759  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  37207760 ggaataataaggaagctactagacactactaaataagcac 37207799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 22600700 - 22600839
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||     
T  22600700 agaatgatgaagaataatatggaagactctagaatattagggaataatgtggaagtctctagaagactaaataataatatagaagtctctagaatactat 22600799  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||| | |||||| |||||||||||||||||||    
T  22600800 ggaataataagaaagctacttgacactactaaataagcac 22600839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 189 - 324
Target Start/End: Complemental strand, 23164636 - 23164501
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| ||||||||||||||||||||||||  || ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  23164636 agaatggtgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactag 23164537  T
Q  289 ggaataataaggatgctactagacactactaaataa 324  Q
    ||||||||||||| ||||||||||||||||||||||    
T  23164536 ggaataataaggaagctactagacactactaaataa 23164501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 11852561 - 11852422
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| ||||||||||||||||||||||||  |   ||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  11852561 agaatggtgaagaataatatggaagactctagaatactatgaaataatgaggaagtctctagaagactaaagaataatatagaagtctctagaatactag 11852462  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  11852461 ggaataataaggaagctactagacactactaaataagcac 11852422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 189 - 328
Target Start/End: Complemental strand, 11850303 - 11850164
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| |||||||||||||||||| |||||  |  ||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||    
T  11850303 agaatggtgaagaataatatggaagactcttgaatactatggaataatgtggaagtctctagaagactaaagaataatatagaagtctctaaaatactag 11850204  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  11850203 ggaataataagaaagctactagacactactaaataagcac 11850164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 1779581 - 1779495
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact 315  Q
    |||||||| ||||||| ||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  1779581 agaataatatggaagtttctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacact 1779495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 1779855 - 1779731
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||| |  |||||||  | |||| |||||||||||||| | ||||||||| ||||| || ||||||||||||||||||     
T  1779855 agaatgatgaagaataatatggaagtccttagaatactaaagaaaaatgtggaagtctccataacactaaagaataatatggaagtctctagaatactaa 1779756  T
Q  289 ggaataataaggatgctactagaca 313  Q
     |||||||   || |||||||||||    
T  1779755 agaataatgtcgaagctactagaca 1779731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 37207634 - 37207738
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaa 292  Q
    ||||||| ||||||||||||| |||||||||     |||||||| |||||| |||||||| ||||   |||||  | ||||||||||||| ||||  |||    
T  37207634 tgatgaagaataatatggaagtctctagaatgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaa 37207733  T
Q  293 taata 297  Q
    |||||    
T  37207734 taata 37207738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 31488955 - 31489094
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| ||||||||||||||||||||||||  || |||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||    
T  31488955 agaatggtgaagaataatatggaagactctagaatactagggaataatgtggaagtctctaaaagactaaagaataatatagaagtctctagaatactag 31489054  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  31489055 ggaataataaggaagctactagacactactaaataagcac 31489094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 31486671 - 31486810
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    |||||| |||| ||||||||||||||||||||||||  || |||||||||||||| |||||||| |||| | ||||| ||||||||||||||||||||||    
T  31486671 agaatggtgaagaataatatggaagactctagaatactagggaataatgtggaagcctctagaagactagagaataatatagaagtctctagaatactag 31486770  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  31486771 ggaataataaggaagctactagacactactaaataagcac 31486810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 34576969 - 34576883
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacact 315  Q
    ||||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||  ||||||  |||| |||||| ||||||    
T  34576969 agaataatgtggaagtctctagaacactaaagaataatatggaagtctctaaaatactaaagaataacgaggaagctactggacact 34576883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 15729871 - 15729981
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||| | |||||||| |  | |||||||||||||||||||||| |||  ||| ||||  |  ||||||||||||||||||     
T  15729871 agaatgatgaagaataatatggatgtctctagaacaataaagaataatgtggaagtctctag-acataaaagaatattaaggaagtctctagaatactaa 15729969  T
Q  289 ggaataataagg 300  Q
     |||||||||||    
T  15729970 agaataataagg 15729981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 324
Target Start/End: Original strand, 23859767 - 23859906
Alignment:
Q  191 aatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagt----ctctagaacactaaataataaaatagaagtctctagaatact 286  Q
    ||||||||| ||  |||||||| |||||||||||  |  ||||||| ||||| |    ||||||||||||||| ||||| || | |||||||||||||||    
T  23859767 aatgatgaagaaagatatggaacactctagaatactaatgaataatatggaattaagcctctagaacactaaagaataatatgggagtctctagaatact 23859866  T
Q  287 agggaataataaggatgctactagaca--ctactaaataa 324  Q
    | | ||||||||||| ||||||| |||  |||||||||||    
T  23859867 atgaaataataaggaagctactaaacattctactaaataa 23859906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 301
Target Start/End: Original strand, 29801774 - 29801875
Alignment:
Q  201 aataatatggaagactctagaat-agcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataag 299  Q
    ||||||||||||| ||||||||| |  | | |||||| |||||||||||||||||| ||| ||||| |  ||||| ||||||||||||  ||||||||||    
T  29801774 aataatatggaagtctctagaataataaaaaaataatatggaagtctctagaacaccaaagaataatagggaagtatctagaatactaaagaataataag 29801873  T
Q  300 ga 301  Q
    ||    
T  29801874 ga 29801875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 34576979 - 34576903
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataa 265  Q
    ||||||||||| |||||| |||||| |||||||| |  | |||||||| |||||||||||| || |||||| |||||    
T  34576979 agaatgatgaagaataatgtggaagtctctagaacactaaagaataatatggaagtctctaaaatactaaagaataa 34576903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 265
Target Start/End: Original strand, 29801802 - 29801869
Alignment:
Q  198 aaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataa 265  Q
    |||||||||||||||| |||||||| | || ||||||||  |||||| ||||||| |||||| |||||    
T  29801802 aaaaataatatggaagtctctagaacaccaaagaataatagggaagtatctagaatactaaagaataa 29801869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 45166859 - 45166998
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactag 288  Q
    ||||||||||| ||||||||||||| ||||||||| |   |||||||| ||||||||||||||| |||||| ||||| |||||||||| |||||||||||    
T  45166859 agaatgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactag 45166958  T
Q  289 ggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  45166959 ggaataataaggaagctactagacactactaaataagcac 45166998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 45161971 - 45162106
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaa 292  Q
    ||||||| ||||||||||||| ||||||||| |   |||||||| ||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||    
T  45161971 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaa 45162070  T
Q  293 taataaggatgctactagacactactaaataagcac 328  Q
    ||||||| | ||||||||||||||||||||||||||    
T  45162071 taataagaaagctactagacactactaaataagcac 45162106  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 42468795 - 42468696
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||| |||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  42468795 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagatactactaaataagcac 42468696  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 42471124 - 42471025
Alignment:
Q  229 agaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    |||||||| |||||||||||||||   | || ||||| || |||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  42471124 agaataatatggaagtctctagaatggtgaagaataatatggaagactctagaatacttgggaataataaggaagctactagatactactaaataagcac 42471025  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 261 - 328
Target Start/End: Complemental strand, 50856085 - 50856018
Alignment:
Q  261 aataaaatagaagtctctagaatactagggaataataaggatgctactagacactactaaataagcac 328  Q
    ||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  50856085 aataatatggaagtctctagaatactatggaataataaggaagctactagacactactaaataagcac 50856018  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 42468805 - 42468742
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaa 252  Q
    ||||||||||| ||||||||||||| ||||||||| |   |||||||| |||||| ||||||||    
T  42468805 agaatgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaa 42468742  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 42471131 - 42471071
Alignment:
Q  192 atgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaa 252  Q
    |||||||| ||||||||||||| ||||||||| |   |||||||| |||||| ||||||||    
T  42471131 atgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagactctagaa 42471071  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 311
Target Start/End: Complemental strand, 18966518 - 18966398
Alignment:
Q  193 tgatgaaaaataatatggaagactct--agaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctctagaatactaggg 290  Q
    ||||||| ||||||||||||| ||||  ||||||  | ||||||||||||||||||||||||||| ||| ||||| |  |||||||||||||||||||      
T  18966518 tgatgaagaataatatggaagtctctctagaatactaaagaataatgtggaagtctctagaacaccaaagaataatagggaagtctctagaatactagat 18966419  T
Q  291 aataataaggatgctactaga 311  Q
    ||||||||||  |||||||||    
T  18966418 aataataaggtagctactaga 18966398  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 39578235 - 39578307
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataa 265  Q
    ||||||| ||| ||||||||||||||||||||  | ||||||||||| |||| |  ||||||||||| |||||    
T  39578235 tgatgaagaatgatatggaagactctagaatactaaagaataatgtgaaagtttacagaacactaaagaataa 39578307  T

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Target: scaffold0008 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 73069 - 73153
Alignment:
Q  193 tgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtctc 277  Q
    ||||||| ||||||||||||| ||||||||| |   |||||||| ||||||||||||||| |||||| ||||| |||||||||||    
T  73069 tgatgaagaataatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtctc 73153  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 31439 - 31527
Alignment:
Q  188 aagaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtct 276  Q
    |||||||||||| ||||||||||||  ||||| || |  | |||| ||||||||||||||||||||||| || ||||| || |||||||    
T  31439 aagaatgatgaagaataatatggaactctctaaaacactaaagaacaatgtggaagtctctagaacactcaagaataatatggaagtct 31527  T

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Target: scaffold0050; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 29122 - 29209
Alignment:
Q  189 agaatgatgaaaaataatatggaagactctagaatagcagagaataatgtggaagtctctagaacactaaataataaaatagaagtct 276  Q
    ||||||||||| ||||||||||||| ||||| || |  | |||| ||||||||||||||||||||| | || ||||| || |||||||    
T  29122 agaatgatgaagaataatatggaagtctctaaaacactaaagaacaatgtggaagtctctagaacattcaagaataatatggaagtct 29209  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 11287 - 11358
Alignment:
Q  240 gaagtctctagaacactaaataataaaatagaagtctctagaatactagggaataataaggatgctactaga 311  Q
    |||||||||||||||||||| ||||| || |||||||||| |||  ||  |||||||||||| |||||||||    
T  11287 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 11358  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 21199149 - 21199203
Alignment:
Q  261 aataaaatagaagtctctagaatactagggaataataaggatgctactagacact 315  Q
    ||||| || |||||||||||||||||| ||||||||||||| ||||||| |||||    
T  21199149 aataatatggaagtctctagaatactatggaataataaggaagctactatacact 21199203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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