View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16201_low_4 (Length: 323)
Name: NF16201_low_4
Description: NF16201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16201_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 34771488 - 34771760
Alignment:
| Q |
1 |
tacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttcaacttctaagaaaaatgtctaatatttgg |
100 |
Q |
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| T |
34771488 |
tacttcaacacacacacattcatatgcatattcacattcacactcttctgttttttgcttttgaactcttcaacttctaagaaaaatgtctaatatttgg |
34771587 |
T |
|
| Q |
101 |
gatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgnnnnnnnngttggaatgtgtttagatttcatgatcatgt |
200 |
Q |
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| T |
34771588 |
gatggttgttacctatttattattttcatcttcaatcaattcttacatttcattgttgatgttttttttgttggaatgtgtttagatttcatgatcatgt |
34771687 |
T |
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| Q |
201 |
tcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttacc |
273 |
Q |
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| T |
34771688 |
tcatgttcatcatgttcatttcaaccatgctacatgttacattacatctttccaaacttgatagacttttacc |
34771760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 34781083 - 34781161
Alignment:
| Q |
28 |
atattcacattcacactcttctgtttt-ttgcttttgaactcttcaacttctaagaaaaatgtctaatatttgggatgg |
105 |
Q |
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| T |
34781083 |
atattcacatttacattcttctgtttttttgcttttgaactcttcaacttctgataaaaatgtctaatatttgggatgg |
34781161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 34795968 - 34796000
Alignment:
| Q |
10 |
acacacacattcatatgcatattcacattcaca |
42 |
Q |
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| T |
34795968 |
acacacacattcatatgcatattcacattcaca |
34796000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 323
Target Start/End: Original strand, 34771780 - 34771810
Alignment:
| Q |
293 |
caaatattcaaactacttctacttcaatctt |
323 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34771780 |
caaatattcaaactacttctacttcaatctt |
34771810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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