View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16202_high_3 (Length: 427)

Name: NF16202_high_3
Description: NF16202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16202_high_3
NF16202_high_3
[»] chr4 (31 HSPs)
chr4 (9-409)||(3438402-3438799)
chr4 (174-292)||(8184031-8184149)
chr4 (40-285)||(553466-553711)
chr4 (107-394)||(546791-547078)
chr4 (173-292)||(8187091-8187210)
chr4 (29-324)||(1548282-1548575)
chr4 (219-385)||(370806-370973)
chr4 (103-292)||(7225813-7226002)
chr4 (40-376)||(1524353-1524686)
chr4 (175-292)||(7307840-7307957)
chr4 (27-292)||(55908582-55908847)
chr4 (102-394)||(640793-641085)
chr4 (172-331)||(1537766-1537925)
chr4 (39-293)||(12121323-12121577)
chr4 (81-244)||(1600447-1600610)
chr4 (228-284)||(558486-558542)
chr4 (81-145)||(6006455-6006519)
chr4 (168-244)||(12116570-12116646)
chr4 (173-282)||(1513407-1513516)
chr4 (81-146)||(1533898-1533963)
chr4 (168-288)||(570335-570455)
chr4 (174-258)||(1519143-1519227)
chr4 (12-147)||(8186930-8187065)
chr4 (120-288)||(1552711-1552882)
chr4 (206-282)||(1508036-1508112)
chr4 (103-147)||(53761702-53761746)
chr4 (251-324)||(644779-644852)
chr4 (81-146)||(1495830-1495895)
chr4 (273-394)||(1545651-1545772)
chr4 (83-144)||(12120052-12120113)
chr4 (221-321)||(1517544-1517644)
[»] chr8 (9 HSPs)
chr8 (189-401)||(17628030-17628242)
chr8 (168-401)||(32151172-32151405)
chr8 (29-379)||(18315129-18315479)
chr8 (107-288)||(34936097-34936278)
chr8 (84-366)||(28246206-28246486)
chr8 (175-324)||(27922456-27922605)
chr8 (38-298)||(17636262-17636526)
chr8 (171-288)||(21235542-21235659)
chr8 (234-283)||(44736524-44736573)
[»] chr3 (9 HSPs)
chr3 (107-280)||(51120827-51121000)
chr3 (219-385)||(514774-514940)
chr3 (103-401)||(51113711-51114009)
chr3 (103-298)||(13470662-13470857)
chr3 (105-292)||(51764372-51764559)
chr3 (40-306)||(1657217-1657479)
chr3 (11-64)||(51764281-51764334)
chr3 (9-147)||(514564-514702)
chr3 (198-260)||(27005797-27005859)
[»] chr6 (21 HSPs)
chr6 (84-311)||(11936186-11936413)
chr6 (84-311)||(11948166-11948393)
chr6 (107-324)||(6585171-6585388)
chr6 (103-282)||(6432151-6432330)
chr6 (103-289)||(7119140-7119326)
chr6 (103-289)||(7131618-7131804)
chr6 (103-282)||(6402850-6403029)
chr6 (27-282)||(6594463-6594715)
chr6 (28-148)||(9411476-9411596)
chr6 (103-298)||(6415940-6416135)
chr6 (198-288)||(6423201-6423291)
chr6 (103-280)||(6394856-6395033)
chr6 (103-348)||(14820617-14820862)
chr6 (198-282)||(10579761-10579845)
chr6 (172-282)||(6409996-6410106)
chr6 (175-265)||(28935056-28935146)
chr6 (251-324)||(6426459-6426532)
chr6 (107-300)||(7994116-7994309)
chr6 (251-289)||(19632422-19632460)
chr6 (103-144)||(8913914-8913955)
chr6 (172-264)||(12102274-12102366)
[»] chr5 (7 HSPs)
chr5 (45-330)||(32267417-32267699)
chr5 (26-288)||(41889407-41889669)
chr5 (180-345)||(41901542-41901707)
chr5 (33-145)||(41901398-41901510)
chr5 (211-282)||(37937877-37937948)
chr5 (211-342)||(38267594-38267725)
chr5 (230-323)||(12845542-12845635)
[»] chr2 (4 HSPs)
chr2 (107-282)||(45245019-45245194)
chr2 (27-292)||(1037518-1037783)
chr2 (200-287)||(32785799-32785886)
chr2 (9-141)||(32785611-32785740)
[»] chr7 (3 HSPs)
chr7 (103-298)||(15092081-15092276)
chr7 (86-244)||(7977606-7977764)
chr7 (103-288)||(10614577-10614762)
[»] chr1 (7 HSPs)
chr1 (206-400)||(29658929-29659123)
chr1 (206-366)||(29718956-29719116)
chr1 (206-289)||(7554471-7554554)
chr1 (26-277)||(19468355-19468603)
chr1 (175-271)||(52082582-52082678)
chr1 (26-64)||(9581276-9581314)
chr1 (26-64)||(9586844-9586882)
[»] scaffold0295 (1 HSPs)
scaffold0295 (81-292)||(532-743)
[»] scaffold0807 (1 HSPs)
scaffold0807 (103-147)||(1394-1438)
[»] scaffold0014 (1 HSPs)
scaffold0014 (108-145)||(88943-88980)
[»] scaffold0041 (1 HSPs)
scaffold0041 (246-292)||(39164-39210)


Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 3438402 - 3438799
Alignment:
Q  9 gagatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagt 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3438402 gagatgaaagcctcttgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgactacatatctgacgaaggtgttattcaagt 3438501  T
Q  109 tttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattg 208  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  3438502 tttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtattg 3438601  T
Q  209 agcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtca 308  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3438602 agcttgtcacatacaagagttgatgataaa-tactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtca 3438700  T
Q  309 cagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgatcaagtgtatgctaattttgttgtcgagat 408  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  3438701 cagtgaagggagtgaagtatgtgatgaaaaactgt--acaaccgagggaggtcaatttaaggggttgcgatcaagtgtatgctaattttgttgacgagat 3438798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 292
Target Start/End: Original strand, 8184031 - 8184149
Alignment:
Q  174 gaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggct 273  Q
    ||||||||||||| ||| | ||| | ||||| |||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggct 8184130  T
Q  274 tttgcaactgttactggaa 292  Q
    |||| ||||||||||||||    
T  8184131 tttggaactgttactggaa 8184149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 40 - 285
Target Start/End: Complemental strand, 553711 - 553466
Alignment:
Q  40 tttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttg 139  Q
    |||||||||||||||| |||||||| ||||| | | | || |  ||||||| |||| |||| |||| |||||||||| | ||||||| ||||||||||||    
T  553711 tttccccaatttgcagatgcttgatttgagatattcctacgatgtatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatttg 553612  T
Q  140 aacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaag 239  Q
    |||||| |  | |||| | ||||||| || |||  | |||||||| | |||   ||| ||||||| |||| |||||||  |||||||||||||||| |||    
T  553611 aacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaag 553512  T
Q  240 cactccatgtaatctcaaagagttgttgtgggcttttgcaactgtt 285  Q
    ||||  |||| || ||||||||||||| ||||||||||||||||||    
T  553511 cacttaatgtgatttcaaagagttgttctgggcttttgcaactgtt 553466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 107 - 394
Target Start/End: Complemental strand, 547078 - 546791
Alignment:
Q  107 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 206  Q
    |||||||||||| |||||||||| || |||||||||||| |   |||||||| ||||||  |   ||||||||||||||| ||| | |||||||||||      
T  547078 gttttaaggagatgttgtaagataaggcatttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtgg 546979  T
Q  207 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgt 306  Q
    ||| |||||||| |||||  ||  ||||| || ||||| |||| ||||||||||||||||||||||||||| || |||||||||||   |||     |||    
T  546978 tgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgt 546879  T
Q  307 cacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgatcaagtgtatgctaat 394  Q
    ||||| ||||||||||||  ||||| |  ||||||| ||| |||  || ||| |||||||||||| |||| || ||||| ||| ||||    
T  546878 cacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaatttaagggcttgtaataaagtgaatgttaat 546791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 173 - 292
Target Start/End: Original strand, 8187091 - 8187210
Alignment:
Q  173 ggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggc 272  Q
    ||||||||||||||  |||| ||| ||||||| |||| |||||||||||||||||||||||||||| ||||  ||| ||| |||||||||||||||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggc 8187190  T
Q  273 ttttgcaactgttactggaa 292  Q
    |||||||  |||||||||||    
T  8187191 ttttgcagttgttactggaa 8187210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 1548282 - 1548575
Alignment:
Q  29 ttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaaga 128  Q
    |||||||| ||||||||||||||||| ||||||||| |||   | |||     |||||| ||||||||| ||  | ||||||||||   | |||||||||    
T  1548282 ttttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttttaag---atgttgtaaga 1548378  T
Q  129 ttagacatttgaacttagctggttgtttaggagtgaatttgcgt-ggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagag 227  Q
    ||||||| |||||||||||| || |||||  ||||||  | | | ||| ||||||||||  || | ||| ||||||| |||| |||||||||||||||      
T  1548379 ttagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagta 1548478  T
Q  228 ttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaa 324  Q
    |||||||| || ||||| |||| |||||||||||||||||||||||||||||  ||||||   ||  |||||||  | |||||| ||||||||||||    
T  1548479 ttgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaa 1548575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 385
Target Start/End: Complemental strand, 370973 - 370806
Alignment:
Q  219 atacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaaggg 318  Q
    ||||||||||  || || ||||||| ||||| |||||||||||||||||| ||||||||||||| |||||| ||  |||| ||||| |||||  || |||    
T  370973 atacaagagtctattatgaagcacttcatgtgatctcaaagagttgttgtcggcttttgcaactattactgcaaaattgtgaaggtatcacaaagatggg 370874  T
Q  319 agtgaagtatgtgatgaaaaactgtacacaacc-gagggaggtcaatttaaggggttgtgatcaagtg 385  Q
    ||||||| ||||| |||||||||| |||||||| ||| ||| |||||||||| |||||| || |||||    
T  370873 agtgaagcatgtggtgaaaaactgcacacaacctgagagagatcaatttaagcggttgtaataaagtg 370806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 292
Target Start/End: Original strand, 7225813 - 7226002
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |    |||  | |||||||  | ||    ||||||||||| |||    ||||||||    
T  7225813 tcaagttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggag 7225912  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 292  Q
    || |||| |||||||||||||||||||||||| |||| ||| | ||| || ||||||||||||||||| ||||||||||| |||||||||    
T  7225913 gtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaa 7226002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 376
Target Start/End: Original strand, 1524353 - 1524686
Alignment:
Q  40 tttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttg 139  Q
    ||||||||||||||||||||||||| | ||  | |||    || ||||||| |||||| || |||| |||||||||||| |||||||  |||| ||||||    
T  1524353 tttccccaatttgcagctgcttgatttaagttattgctcatacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 1524452  T
Q  140 aacttagctggttgtt-taggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaa 238  Q
    ||||||||    |||| ||  |  ||| || | ||||||||||||||| ||| | || |||||||| ||||  ||||||| |||||| ||||||||| ||    
T  1524453 aacttagccaactgttctaaaatagaactt-catggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaa 1524551  T
Q  239 gcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaa 338  Q
     ||||| || | |||||| |||||||| |||||||||||||||||||| ||     |||| |   |||||||| || ||||||||| ||||||||  |||    
T  1524552 acactctatatgatctcacagagttgtcgtgggcttttgcaactgttattgcgtagttgtta---tgtcacagagaggggagtgaattatgtgatagaaa 1524648  T
Q  339 actgtacacaaccgagggaggtcaatttaaggggttgt 376  Q
    |||| ||||||| ||| ||| | ||||| |||||||||    
T  1524649 actgcacacaactgagagagattaatttgaggggttgt 1524686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 7307957 - 7307840
Alignment:
Q  175 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctt 274  Q
    |||||||||| | ||| | |||||||||||||||| ||||||| |||||  |||||||||| ||||||| | | | |||||||||||||||||| |||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggctt 7307858  T
Q  275 ttgcaactgttactggaa 292  Q
    ||||| ||||||||||||    
T  7307857 ttgcacctgttactggaa 7307840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 55908582 - 55908847
Alignment:
Q  27 tgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaa 126  Q
    ||||| |||| |||||||||||||||||  | |||||| ||||    ||| |  |||||||||| |||||| ||  | ||||| |||||||| |||||||    
T  55908582 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttctaaggagatgttgtaa 55908681  T
Q  127 gattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaaga 226  Q
    | ||||||||||||| |||||    |||| | |||||||  | | | |||| |||||| | ||| |  |||| ||||| || | ||||||||||||| |     
T  55908682 ggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgt 55908781  T
Q  227 gttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 292  Q
    ||||||||| || ||||| || | |||||||||| ||||||||||||||| |||||||| ||||||    
T  55908782 gttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaa 55908847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 394
Target Start/End: Complemental strand, 641085 - 640793
Alignment:
Q  102 ttcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattgga 201  Q
    ||||||||||||||| | |||||||  ||||||||||||||||||| ||||||   ||||| ||  | | ||||||||| |||||  |  ||| ||||||    
T  641085 ttcaagttttaaggatatgttgtaatgttagacatttgaacttagccggttgtgatggagtaaacctacttggaatgaaatttgaactaccaatattgga 640986  T
Q  202 ggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaa 301  Q
    ||| |||| ||||||| ||||||  ||||||||| || ||||| | || | |||||||| |||  |||| |||||||| ||||||||||||  |||| |     
T  640985 ggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcat 640886  T
Q  302 ggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgatcaagtgtatgctaat 394  Q
      ||| |||  ||||||||||||  ||||| |  ||||||| | | ||   || ||||||||||||| ||||||| || ||||| ||||||||    
T  640885 tatgtaacaaagaagggagtgaatcatgtggtagaaaactgcaaagaattaagagaggtcaatttaaagggttgtaataaagtgaatgctaat 640793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 331
Target Start/End: Original strand, 1537766 - 1537925
Alignment:
Q  172 tggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtggg 271  Q
    ||||||||||||||| ||| | ||| | || || |||| ||||||| ||||||  ||| |||| ||| ||||   ||||||||||||| ||||| |||||    
T  1537766 tggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T
Q  272 cttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtg 331  Q
    ||||||||||| ||||||||| ||||| |   |||||||  |||||||||||||||||||    
T  1537866 cttttgcaacttttactggaactttgttatcttgtcacacagaagggagtgaagtatgtg 1537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 293
Target Start/End: Original strand, 12121323 - 12121577
Alignment:
Q  39 ttttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacattt 138  Q
    ||||||||||||||||  |||||||| ||||    ||| |  |||||||||| |||||| || | ||||| ||||||| | |||   ||||||  |||||    
T  12121323 ttttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattttccaagtcttaaggacatgttccgagattacgcattt 12121422  T
Q  139 gaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaa 238  Q
    ||||||| |  |||||||||||  |||  ||||  ||||||||||||| ||| | ||| | || || |||| ||||||| ||||||  ||||||||| ||    
T  12121423 gaacttaaccagttgtttaggaaggaagctgcgccgaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaa 12121522  T
Q  239 gcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaat 293  Q
     |||||   |||||||||||| ||||  |||||||||||||||| | ||||||||    
T  12121523 acactctccgtaatctcaaagtgttgccgtgggcttttgcaactctcactggaat 12121577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 1600610 - 1600447
Alignment:
Q  81 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaa 180  Q
    |||||||||| |||||| ||  ||||||||||||||||  || ||| ||||||||||||||||||||    |||| |  | ||||  |||| ||||||||    
T  1600610 acatatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaa 1600511  T
Q  181 ctttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 244  Q
    |||||| |||   ||| ||||||| |||| ||||||| ||||||| ||||| ||| ||||||||    
T  1600510 ctttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactc 1600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 558542 - 558486
Alignment:
Q  228 ttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgt 284  Q
    |||||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaactgt 558486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 6006519 - 6006455
Alignment:
Q  81 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaactta 145  Q
    |||||||||| |||||||||  |||||||||||||| | || |||||||||||||||||||||||    
T  6006519 acatatctgatgaaggtgttgctcaagttttaaggaaatgtagtaagattagacatttgaactta 6006455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 12116570 - 12116646
Alignment:
Q  168 tgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 244  Q
    ||||| ||||||||||||||||| |||| || ||||| |||| ||||||||||||||| ||||||||| || |||||    
T  12116570 tgcgtagaatgaactttgatgttccaaatttagaggtgttgaacttgtcacatacaagtgttgatgatgaatcactc 12116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 1513407 - 1513516
Alignment:
Q  173 ggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggc 272  Q
    |||||||||||||| ||| | ||| | || || |||| |||||||  |||||  ||||||||| || ||||| | |||||||||||| ||||| ||||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggc 1513506  T
Q  273 ttttgcaact 282  Q
    ||||||||||    
T  1513507 ttttgcaact 1513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 1533898 - 1533963
Alignment:
Q  81 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttag 146  Q
    |||||||||| |||||| ||| ||| |||||||||||| |||||||||| | ||||||||||||||    
T  1533898 acatatctgaagaaggtattagtcatgttttaaggagatgttgtaagatgacacatttgaacttag 1533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 288
Target Start/End: Complemental strand, 570455 - 570335
Alignment:
Q  168 tgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttg 267  Q
    |||||||| |||||||||| |||   ||| | ||||| |||| ||||||| ||||| |||||||| |  ||| |||| || | || |||||||||||| |    
T  570455 tgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcg 570356  T
Q  268 tgggcttttgcaactgttact 288  Q
     ||||||||||||||||||||    
T  570355 cgggcttttgcaactgttact 570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  174 gaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaa 258  Q
    ||||||||||||| ||| | ||| | ||||| |||| ||||||||||||||| ||||||||  |||||||| |||| ||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 8186930 - 8187065
Alignment:
Q  12 atgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagtttt 111  Q
    |||||| |||||  ||||| |||||  | ||||||||||||||| |||||||| ||||  | ||| |  |||||||||| |||||| ||  |||||||||    
T  8186930 atgaaaacctcgaaatgttatcttccttattccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagtttt 8187029  T
Q  112 aaggagacgttgtaagattagacatttgaacttagc 147  Q
     | |||| ||||| |||||||  |||||||||||||    
T  8187030 gaagagatgttgtgagattagggatttgaacttagc 8187065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 288
Target Start/End: Original strand, 1552711 - 1552882
Alignment:
Q  120 gttgtaagattagacatttgaacttagc---tggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtc 216  Q
    ||||||||||||||||||||||||||||   | ||| | ||| || |||  | | |||| ||||||||||  || | ||| |||| || ||||  |||||    
T  1552711 gttgtaagattagacatttgaacttagcccatagttttatagaagggaagctacttggactgaactttgaaattcccaaactggaagtgttgaatttgtc 1552810  T
Q  217 acatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttact 288  Q
    ||||||||   || ||||| || ||||| |||| || ||||||| |||| ||||||||||||| ||||||||    
T  1552811 acatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtgggcttttgcagctgttact 1552882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 1508036 - 1508112
Alignment:
Q  206 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaact 282  Q
    |||| |||||||||||| |  ||||||||| || ||||   ||||||||||||| ||||| ||||||||||||||||    
T  1508036 ttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtgggcttttgcaact 1508112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 53761702 - 53761746
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagc 147  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||    
T  53761702 tcaagttttaaggagatgttgtaacattaggcatttgaacttagc 53761746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 644852 - 644779
Alignment:
Q  251 atctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaa 324  Q
    ||||||||||||||  | |||||| ||||||||| |||  |||||||| |||||||||| | ||| ||||||||    
T  644852 atctcaaagagttgcagcgggcttgtgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaa 644779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 1495830 - 1495895
Alignment:
Q  81 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttag 146  Q
    |||||||||| |||||| ||  ||| |||||||||||| |||||||||| | ||||||| ||||||    
T  1495830 acatatctgaagaaggtattggtcatgttttaaggagatgttgtaagatgacacatttggacttag 1495895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 394
Target Start/End: Complemental strand, 1545772 - 1545651
Alignment:
Q  273 ttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaagggg 372  Q
    |||||||||||||| ||| || |||| |  | ||||||  ||||||||||||  ||| | | |||||||| |||||||  || | | ||||||| |||||    
T  1545772 ttttgcaactgttattggtatattgtgagtgcgtcacatagaagggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttgagggg 1545673  T
Q  373 ttgtgatcaagtgtatgctaat 394  Q
    ||||||| ||||| ||||||||    
T  1545672 ttgtgataaagtgcatgctaat 1545651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 12120052 - 12120113
Alignment:
Q  83 atatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaactt 144  Q
    |||||| |||||||| ||  ||||||||||| || | || ||||||||||||||||||||||    
T  12120052 atatctaacgaaggtattggtcaagttttaaagaaaagtagtaagattagacatttgaactt 12120113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 321
Target Start/End: Original strand, 1517544 - 1517644
Alignment:
Q  221 acaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggag 320  Q
    ||||||||| | ||| | ||||||  |||||||||||||| |||| ||||  ||||| |||| |||||||||  |||| | | |||||||| ||||||||    
T  1517544 acaagagttaacgatgacgcactctttgtaatctcaaagaattgtcgtggaattttgaaactattactggaaaattgtcatgatgtcacagagaagggag 1517643  T
Q  321 t 321  Q
    |    
T  1517644 t 1517644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 189 - 401
Target Start/End: Original strand, 17628030 - 17628242
Alignment:
Q  189 tttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttact 288  Q
    |||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||| |||||| ||| |||| |||||    
T  17628030 tttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggctcttgaaactattact 17628129  T
Q  289 ggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgatcaagtgtat 388  Q
     ||||||||||||||||||||||  |||||||||||| ||||| |||||||||| ||||| | ||||||| ||| ||||||||||||| || ||||| |     
T  17628130 agaattttgtaaaggtgtcacagacaagggagtgaagcatgtgttgaaaaactgcacacagctgagggagatcagtttaaggggttgttatgaagtgaaa 17628229  T
Q  389 gctaattttgttg 401  Q
    |||||| ||||||    
T  17628230 gctaatattgttg 17628242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 168 - 401
Target Start/End: Complemental strand, 32151405 - 32151172
Alignment:
Q  168 tgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttg 267  Q
    |||||||||||||||| || ||||| ||  ||||||| || | |||||||  ||||||  |||||||| || ||||| |||| ||||||||||||||| |    
T  32151405 tgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtag 32151306  T
Q  268 tgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaattta 367  Q
    ||||||||||||||||||| |||  | |||||||  |||||||| |||||| |||||| |||||| ||||||||||| ||||| ||||||| ||||||||    
T  32151305 tgggcttttgcaactgttattggtgtcttgtaaatatgtcacagagaagggggtgaagcatgtgaggaaaaactgtatacaactgagggagatcaattta 32151206  T
Q  368 aggggttgtgatcaagtgtatgctaattttgttg 401  Q
    |||||||||||||||||| ||||| || ||||||    
T  32151205 aggggttgtgatcaagtgcatgctgatattgttg 32151172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 379
Target Start/End: Original strand, 18315129 - 18315479
Alignment:
Q  29 ttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaaga 128  Q
    |||||||| |||||||||||||||||| |||||||| ||||  | |||||  ||||| |||| |||||| ||  |||||||||| | ||  ||| | |||    
T  18315129 ttttcttccattttccccaatttgcagttgcttgatttgagctactgcgataacatacctgaagaaggtatttgtcaagttttacgaagttgttctgaga 18315228  T
Q  129 ttagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagt 228  Q
    ||||||| |||||||||||| ||  || | || ||||  | ||||||||||||||| | ||| | ||| ||||||| |||| |||||||||||||| |||    
T  18315229 ttagacagttgaacttagctcgtgattcaagaatgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagt 18315328  T
Q  229 tgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtat 328  Q
    ||||||| |||||||| |||| ||||||||||||||| || ||||||||||||||||| |||||   |||   | |||||||| ||| ||||  ||||||    
T  18315329 tgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgcaactgttattggaacgctgttgtgatgtcacagagaaaggagaaaagtat 18315428  T
Q  329 gtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgat 379  Q
    ||| |  ||||||| ||||||| ||  ||| ||||| ||| ||||||||||    
T  18315429 gtggtagaaaactgcacacaactgatagagctcaatataatgggttgtgat 18315479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 107 - 288
Target Start/End: Original strand, 34936097 - 34936278
Alignment:
Q  107 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 206  Q
    |||||||||||| ||||| | |||||||||||| |||| || | ||||| |  ||||||  | |   |||||| |||||||||| ||||| | ||||| |    
T  34936097 gttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtgt 34936196  T
Q  207 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttact 288  Q
    ||  ||||||| |||||||||||||||||||| ||||| |||  ||| ||||||||||| |||||||||||||||| |||||    
T  34936197 tggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattact 34936278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 366
Target Start/End: Original strand, 28246206 - 28246486
Alignment:
Q  84 tatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactt 183  Q
    ||||||| |||||| || |||| ||||||| || | ||||||| |||||||||||||| ||| || |||||| | || ||||  | | |  | |||||||    
T  28246206 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactt 28246305  T
Q  184 tgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactg 283  Q
    ||| ||| | ||| ||||||| |||  |||||||  ||||||||||||  ||||| ||||| ||   ||||||||||||||| | |||||||||||||||    
T  28246306 tgaagttcccaaactggaggtgttggacttgtcatttacaagagttga--ataaatcactctattggatctcaaagagttgtagcgggcttttgcaactg 28246403  T
Q  284 ttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaattt 366  Q
    | |||  |||||||| ||||||||||||  ||  |||||| | ||||| |  |||| || ||||||| ||| |||||||||||    
T  28246404 tcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcaattt 28246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 175 - 324
Target Start/End: Complemental strand, 27922605 - 27922456
Alignment:
Q  175 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggctt 274  Q
    |||||||||||| ||| | ||||||||||| |||| ||||||| ||||||  ||||||||| |||||||  || | ||||||||||||||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctt 27922506  T
Q  275 ttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaa 324  Q
    ||| || ||| ||| |||  |||||| | | |||||  ||||||||||||    
T  27922505 ttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaa 27922456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 38 - 298
Target Start/End: Original strand, 17636262 - 17636526
Alignment:
Q  38 attttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatt 137  Q
    ||||||||||||||||||||||||||| |  |||| ||| |  | ||||| ||  ||||| ||  ||||||||||||| || ||| ||| ||||| ||||    
T  17636262 attttccccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatt 17636361  T
Q  138 tgaacttagctggttgtttaggagtgaatttgcgtgga----atgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatg 233  Q
    |||||||||   | |||| | |||||||  | | | ||    ||||||||||| ||| | ||||||||||| |||| ||||||||| ||| ||||||| |    
T  17636362 tgaacttaggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacg 17636461  T
Q  234 ataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgt 298  Q
    || ||||| |  |||| |||||||||||||||  | | ||||||||| ||| ||| |||| ||||    
T  17636462 atgaagcattgtatgtgatctcaaagagttgtcttagacttttgcaattgtcacttgaatattgt 17636526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 288
Target Start/End: Complemental strand, 21235659 - 21235542
Alignment:
Q  171 gtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgg 270  Q
    ||||| |||||||||| ||| | ||| ||||||| |||| ||||||| ||||| |||||||| |  ||| |||| || | || |||||||| ||| |  |    
T  21235659 gtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaagagctgtcgcag 21235560  T
Q  271 gcttttgcaactgttact 288  Q
    ||||||||||||||||||    
T  21235559 gcttttgcaactgttact 21235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 44736573 - 44736524
Alignment:
Q  234 ataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactg 283  Q
    ||||| |||||  ||| ||||||||||||||||||||||||||| |||||    
T  44736573 ataaaacactcattgtgatctcaaagagttgttgtgggcttttgtaactg 44736524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 107 - 280
Target Start/End: Original strand, 51120827 - 51121000
Alignment:
Q  107 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 206  Q
    |||||| ||||| ||||||| |||||||| ||||||||  | ||||||| | |||||||  ||| ||||||||||||||| |||   ||||||||||| |    
T  51120827 gttttatggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgt 51120926  T
Q  207 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaa 280  Q
    ||| |||||| |||||||||||||||||| ||  |||  |||||||||||||||||||| ||||||||||||||    
T  51120927 tgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaa 51121000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 385
Target Start/End: Original strand, 514774 - 514940
Alignment:
Q  219 atacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaaggg 318  Q
    |||||||||| || ||| ||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||| ||  |||| ||||| |||||| || |||    
T  514774 atacaagagtcgacgatgaagcacttcatgtgatctcgaagagttgctgtgggcttttgcaactattactgcaaaattgtgaaggtatcacagagacggg 514873  T
Q  319 agtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgatcaagtg 385  Q
    ||||||| ||||| |||||||||| |||| || ||| ||| |||||||||| |||||| || |||||    
T  514874 agtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtg 514940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 103 - 401
Target Start/End: Original strand, 51113711 - 51114009
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    ||||||||||| |||| ||||||| ||||| |||||||| ||||||   |||| |  | ||||  | | ||||||||||||||| | | | ||| |||||    
T  51113711 tcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggag 51113810  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaag 302  Q
    || ||   ||||||| ||||||  ||||||||| || ||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||  |||| |      
T  51113811 gtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttacc 51113910  T
Q  303 gtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgatcaagtgtatgctaattttgttg 401  Q
     |||||||| ||||||||||||| ||||| |  |||| || ||| |||  || ||| | ||||||| |||||||  | ||||| |||||||||||||||    
T  51113911 atgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttg 51114009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 13470662 - 13470857
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||   ||||  |  ||||||  | | |||||||||||||| |||| | ||  |||||    
T  13470662 tcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggag 13470761  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgt 298  Q
    || |||| ||||||| ||||||  ||| |||||||| ||||| || | |||||||||| ||||||||||||||||||||| ||||| ||| |||||    
T  13470762 gtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgt 13470857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 292
Target Start/End: Original strand, 51764372 - 51764559
Alignment:
Q  105 aagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggt 204  Q
    |||||||||||||| ||| ||||||||| ||||||||| || | |  |||| | |||||||  | | ||||||||||||||  ||| | ||  |||||||    
T  51764372 aagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggt 51764471  T
Q  205 attgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 292  Q
     ||   |||||||  ||||| ||||||||||||| ||||| |||  |||||||||| |||||| |||||||||||||| |||||||||    
T  51764472 gttagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaa 51764559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 306
Target Start/End: Complemental strand, 1657479 - 1657217
Alignment:
Q  40 tttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttg 139  Q
    |||||| ||||| ||||| |||||| ||||  | ||| |  |||||||||| |||||| || |||| ||||||| || | ||||||| ||||||||||||    
T  1657479 tttcccaaatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttg 1657380  T
Q  140 aacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaag 239  Q
    || ||| || |     || || ||||  | |||  | |||||||||| ||| | ||| ||||||| |||  |||||||  ||||||||||||  ||| |     
T  1657379 aatttaactcg----ctaagactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacaatatat 1657284  T
Q  240 cactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgt 306  Q
    ||||| ||   ||||||||||||||  | |||||||||||||||| |||  |||||||| |||||||    
T  1657283 cactctattggatctcaaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgt 1657217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 51764281 - 51764334
Alignment:
Q  11 gatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgat 64  Q
    ||||||||| || | |||||| |||| |||||||||||||||||||||||||||    
T  51764281 gatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttgat 51764334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 514564 - 514702
Alignment:
Q  9 gagatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagt 108  Q
    ||||||||| |||  | |||||| |||| |||||||| |||||||||||  ||||| ||||  | || ||  ||||||||||| || || |   ||||||    
T  514564 gagatgaaaaccttataatgtttgcttcaattttcccgaatttgcagctaattgatttgagctattgtgataacatatctgacaaaagtatctgtcaagt 514663  T
Q  109 tttaaggagacgttgtaagattagacatttgaacttagc 147  Q
    ||||| |||| | | ||||||||| ||||||||||||||    
T  514664 tttaaagagatggtctaagattaggcatttgaacttagc 514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 27005797 - 27005859
Alignment:
Q  198 tggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaaga 260  Q
    ||||||| |||| |||||||||||||||| ||||| ||| | ||||  |||||||||||||||    
T  27005797 tggaggtcttgaacttgtcacatacaagaattgataatacaacactttatgtaatctcaaaga 27005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 84 - 311
Target Start/End: Original strand, 11936186 - 11936413
Alignment:
Q  84 tatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactt 183  Q
    ||||||| |||||| || |||| ||||||| || | ||||||| |||||||||||||| ||| || | |||| | || ||||  | |||  | |||||||    
T  11936186 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11936285  T
Q  184 tgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactg 283  Q
    ||| ||| | ||| ||||||| |||  |||||||  |||||||||||| |||||| ||||| ||   ||||||||||||||| |||||||||||||||||    
T  11936286 tgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactg 11936385  T
Q  284 ttactggaattttgtaaaggtgtcacag 311  Q
    | |||  |||||||| ||||||||||||    
T  11936386 tcacttaaattttgtgaaggtgtcacag 11936413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 84 - 311
Target Start/End: Original strand, 11948166 - 11948393
Alignment:
Q  84 tatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactt 183  Q
    ||||||| |||||| || |||| ||||||| || | ||||||| |||||||||||||| ||| || | |||| | || ||||  | |||  | |||||||    
T  11948166 tatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactt 11948265  T
Q  184 tgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactg 283  Q
    ||| ||| | ||| ||||||| |||  |||||||  |||||||||||| |||||| ||||| ||   ||||||||||||||| |||||||||||||||||    
T  11948266 tgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactg 11948365  T
Q  284 ttactggaattttgtaaaggtgtcacag 311  Q
    | |||  |||||||| ||||||||||||    
T  11948366 tcacttaaattttgtgaaggtgtcacag 11948393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 6585171 - 6585388
Alignment:
Q  107 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 206  Q
    |||||||||||| ||| ||| ||||| |||||||||||  |||| |||| | |||||||  | | |||||| ||||||   ||| |  | ||||||||||    
T  6585171 gttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttacccagttggaggtat 6585270  T
Q  207 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgt 306  Q
    ||| ||||||| ||||||  ||||||||| || ||||| |||| |||||||||||||||| || ||||||| |||| |||||| ||  |||| ||  |||    
T  6585271 tgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgt 6585370  T
Q  307 cacagtgaagggagtgaa 324  Q
    ||||| ||||||| ||||    
T  6585371 cacagagaagggactgaa 6585388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 282
Target Start/End: Complemental strand, 6432330 - 6432151
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||||||||| |||||||  ||| |||||||||||||||   |||| ||  ||||||  | | ||||||||||||||| ||| | ||  || ||    
T  6432330 tcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaag 6432231  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaact 282  Q
    || |||| ||||||| ||||||| ||||||||| || ||||  |||| |||| ||||| ||||||||||||| |||||||    
T  6432230 gtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaact 6432151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 289
Target Start/End: Complemental strand, 7119326 - 7119140
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    |||| | |||||||  | | |||||||||||||| ||||    |  |||||    
T  7119326 tcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggag 7119227  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactg 289  Q
    || |||| ||||||| |||| |  ||||||||| || |||||||||| ||||| |||| |||||| ||||||||| |||| ||||||    
T  7119226 gtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactg 7119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 103 - 289
Target Start/End: Complemental strand, 7131804 - 7131618
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    |||| | |||||||  | | |||||||||||||| ||||    |  |||||    
T  7131804 tcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggag 7131705  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactg 289  Q
    || |||| ||||||| |||| |  ||||||||| || |||||||||| ||||| |||| |||||| ||||||||| |||| ||||||    
T  7131704 gtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactg 7131618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 282
Target Start/End: Complemental strand, 6403029 - 6402850
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| |||| |||| | |||||||  | | |||||| |||||||  ||| |  || | ||     
T  6403029 tcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaa 6402930  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaact 282  Q
    || |||| ||||||| |||| |  ||||||||| || ||||| |||| |||||||||| |||| ||||||||||| ||||    
T  6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaact 6402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 282
Target Start/End: Original strand, 6594463 - 6594715
Alignment:
Q  27 tgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaa 126  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||||    | ||| || ||||||||   |||| ||  |||||||||||||||| ||| |||    
T  6594463 tgtttgcttctattttccccactttggagctgcttgatttgaggttttccgatcaaatatctga---aggtatttgtcaagttttaaggagatgttataa 6594559  T
Q  127 gattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaaga 226  Q
    ||||| ||||||| ||||| | || |||| | |||||||  | | |||||| ||||||   ||| | ||| ||||||| |||  ||||||| |||||       
T  6594560 gattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaatacagag 6594659  T
Q  227 gttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaact 282  Q
    ||||||||| |  |||| | ||| |||||||||| ||||||||||||||| |||||    
T  6594660 gttgatgatgagacactacgtgtgatctcaaagaattgttgtgggcttttacaact 6594715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 9411596 - 9411476
Alignment:
Q  28 gttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaag 127  Q
    |||| |||| ||||||||||||||||||||||||||| |||| | |||     |||||||| |||||||| || | || |||||||||||| || ||||     
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaac 9411497  T
Q  128 attagacatttgaacttagct 148  Q
    ||||||||||||||| |||||    
T  9411496 attagacatttgaacctagct 9411476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 298
Target Start/End: Complemental strand, 6416135 - 6415940
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    ||||||||||| || | ||||||||||| | ||||||||||||||   ||||  |  ||||||  | | ||||||| ||||||  ||| | ||  |||||    
T  6416135 tcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagctacatggaatggactttgtagttcccaacctggag 6416036  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgt 298  Q
    || |||| ||||||| ||||||  ||| |||||||| | ||| |||| |||||||||| |||| | |||||||||||||| ||||| |||||||||    
T  6416035 gtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgt 6415940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 6423291 - 6423201
Alignment:
Q  198 tggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttact 288  Q
    ||||||| |||| ||||||| |||||||||||   |||||| ||||| |||  ||||||||||||||||||||| |||||||||| |||||    
T  6423291 tggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggattttgcaactattact 6423201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 280
Target Start/End: Complemental strand, 6395033 - 6394856
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    ||||||||||| || | |||||||| ||| ||||||||||||||||   |||| |  ||||||  | | ||||||||||||||  ||| |  |  |||||    
T  6395033 tcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggag 6394934  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaa 280  Q
    || |||| ||||||| ||||||| ||||||||| || | ||   ||| |||||||||| |||||||||||||||||||    
T  6394933 gtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttgcaa 6394856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 348
Target Start/End: Complemental strand, 14820862 - 14820617
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    ||||| |||||||| | |||||||| ||| ||||||||||||||    ||||| |||||||||  | | |||||| |||||||  ||| | || || |||    
T  14820862 tcaaggtttaaggaaatgttgtaagcttaaacatttgaacttagaattttgttcaggagtgaaactacatggaattaactttgcagttcccaagttagag 14820763  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaag 302  Q
    || |||| ||| ||| ||||||  |||||| || || ||||  || | ||||| |||| ||||||||||||||||| | | ||||| |||   ||||| |    
T  14820762 gtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattattacttgaaaaatgtaatg 14820663  T
Q  303 gtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtacaca 348  Q
     |||||||| |||||| |||||  ||||| | |||||||| |||||    
T  14820662 atgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacaca 14820617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 10579761 - 10579845
Alignment:
Q  198 tggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaact 282  Q
    ||||||| |||| ||||||| |||||| ||||||||||||| ||||| ||   |||||||||| ||||||| |||||||| ||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaact 10579845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 6410106 - 6409996
Alignment:
Q  172 tggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtggg 271  Q
    ||||||||||||||| ||| | ||  || |||| |||| || |||| ||||||| ||||||||| || | ||  |||| |||||||||| ||||||| ||    
T  6410106 tggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcgg 6410007  T
Q  272 cttttgcaact 282  Q
    |||||||||||    
T  6410006 cttttgcaact 6409996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 28935146 - 28935056
Alignment:
Q  175 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgt 265  Q
    |||||| ||||||||| |  || | ||||| |||| ||||||||||||||||||||| ||| ||||||||  ||| || ||||||||||||    
T  28935146 aatgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 28935056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 6426532 - 6426459
Alignment:
Q  251 atctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaa 324  Q
    |||||||||| ||||||| || |||||||| | ||||| |||  |||||||||||||||| ||||||| |||||    
T  6426532 atctcaaagaattgttgtcggattttgcaattattacttgaaaattgtaaaggtgtcacaatgaagggtgtgaa 6426459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 7994116 - 7994309
Alignment:
Q  107 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 206  Q
    |||||||||| | |||||||||| || ||||||||| |||| | ||||  | |||||||  | |  |||||||||||||  ||| | ||  | ||||| |    
T  7994116 gttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgt 7994215  T
Q  207 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaa 300  Q
    ||| | ||||| ||||||| ||| ||||  || ||||  |||| |||||||||| ||||| ||| ||||||||||| ||||| ||| |||||||    
T  7994216 tgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaa 7994309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 289
Target Start/End: Complemental strand, 19632460 - 19632422
Alignment:
Q  251 atctcaaagagttgttgtgggcttttgcaactgttactg 289  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  19632460 atctcaaagaattgttgtgggcttttgcaactcttactg 19632422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 8913914 - 8913955
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaactt 144  Q
    |||||||||||| ||| |||||||||||| ||||||||||||    
T  8913914 tcaagttttaagaagatgttgtaagattaaacatttgaactt 8913955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 12102366 - 12102274
Alignment:
Q  172 tggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttg 264  Q
    |||| |||||||||| ||| | ||| ||||||| |||| ||||||||||||| |||||||| |  ||| |||| || | || |||||||||||    
T  12102366 tggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 45 - 330
Target Start/End: Complemental strand, 32267699 - 32267417
Alignment:
Q  45 ccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaactt 144  Q
    |||||||||||||||||||| ||||  | ||    | ||||||||| |||||| |  ||||| ||||||||| | ||||||| |||||||||||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  145 agctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 244  Q
    | |    |||| |  ||||||    |  | |||||||||||| ||| | |||||||||||||||| ||||||||| |||| |||||||||| |||||||     
T  32267599 atcccagtgttcaacagtgaa---actagaaatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactt 32267503  T
Q  245 catgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgt 330  Q
     || | ||||||||||||||||||||||||||| || ||| |||  ||  |||||| | | |||||  ||||||||||||| ||||    
T  32267502 tatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagcatgt 32267417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 41889407 - 41889669
Alignment:
Q  26 atgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgta 125  Q
    |||||| |||| |||||||| ||||||||||| |||||| ||||  | ||    | ||||| ||| |||||| ||| |||||||||||||| | ||||||    
T  41889407 atgtttgcttccattttccctaatttgcagctacttgatttgagcaattgttgtcgcatatttgatgaaggtattactcaagttttaaggatatgttgta 41889506  T
Q  126 agattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaag 225  Q
    | |||||| ||||||||||| | || |||| |  ||||||  | | || |||||||||| | ||| | ||||||||||| |||| ||| ||| ||||||     
T  41889507 acattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaa 41889606  T
Q  226 agttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttact 288  Q
    |||||||||| || ||||  ||   ||||||||||||||||| ||||||| | || |||||||    
T  41889607 agttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttact 41889669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 345
Target Start/End: Original strand, 41901542 - 41901707
Alignment:
Q  180 actttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgca 279  Q
    ||||||| ||| | ||| ||||||| |||| ||||||| |||||| |||||||||| |||||||  || | |||||||||||||||||||| |||||| |    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  280 actgttactggaattttgtaaaggtgtcacagtgaagggagtgaagtatgtgatgaaaaactgtac 345  Q
    | ||| |||  ||  |||||| | |||||||  ||||||||||||| ||||| |  ||||||||||    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactgtac 41901707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 41901398 - 41901510
Alignment:
Q  33 cttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattag 132  Q
    |||| ||||||||||||||||||||||||||| ||||  | ||    | ||||| ||| |||||| || |||||||||||||||   ||||||| |||||    
T  41901398 cttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgtaacattag 41901497  T
Q  133 acatttgaactta 145  Q
    |||||||||||||    
T  41901498 acatttgaactta 41901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 37937948 - 37937877
Alignment:
Q  211 cttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaact 282  Q
    |||| ||||||||||| |||||||| || ||||| |||||||||||||||  ||| ||||||||||||||||    
T  37937948 cttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgcaact 37937877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 342
Target Start/End: Original strand, 38267594 - 38267725
Alignment:
Q  211 cttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcaca 310  Q
    |||| |||||||||||||||||||| |  ||||| |||||||||||||||  ||  ||||||||||| ||||||  ||| || ||||||    ||||||     
T  38267594 cttgacacatacaagagttgatgatgacacactctatgtaatctcaaagacgtgccgtgggcttttgaaactgtcgctgcaactttgtacgaatgtcacc 38267693  T
Q  311 gtgaagggagtgaagtatgtgatgaaaaactg 342  Q
    | ||||||||||| | ||||| | ||||||||    
T  38267694 gagaagggagtgatgcatgtggtcaaaaactg 38267725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 12845635 - 12845542
Alignment:
Q  230 gatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtgtcacagtgaagggagtga 323  Q
    |||||| |||||||  ||| ||||||||||||||||||||| || |||||| ||   ||||||  |||||| | ||| |||| |||||||||||    
T  12845635 gatgatgaagcactatatgcaatctcaaagagttgttgtggtctattgcaattggacctggaaaattgtaatgatgttacagagaagggagtga 12845542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 107 - 282
Target Start/End: Original strand, 45245019 - 45245194
Alignment:
Q  107 gttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtat 206  Q
    |||||||||||| ||||||| ||||| ||||| ||||||| | | |||| | || || | || |||||||| |||||||| ||| ||||| | ||||| |    
T  45245019 gttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaactttgaagttccaaaacttgaggtgt 45245118  T
Q  207 tgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaact 282  Q
    |||  |||||| | ||||  ||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||    
T  45245119 tgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaact 45245194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 292
Target Start/End: Original strand, 1037518 - 1037783
Alignment:
Q  27 tgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgtaa 126  Q
    ||||| |||| |||||||||||||||||  | |||||| ||||    ||| |  |||||||||| |||||| ||  | |||||||||||||| |||||||    
T  1037518 tgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaaggagatgttgtaa 1037617  T
Q  127 gattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaaga 226  Q
    | ||||||||||||| |||||    | || | |||||||  | | | |||| |||||| | ||| |  |||| ||||| || | ||||||||||||| |     
T  1037618 ggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgt 1037717  T
Q  227 gttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 292  Q
    ||||||||| || ||||| || | |||||||||| ||||||||||||||| |||||||| ||||||    
T  1037718 gttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaa 1037783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 32785799 - 32785886
Alignment:
Q  200 gaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttac 287  Q
    ||||| |||| |||||||||||||||| |||||||| |||||||  |||| |||||||  |||| |  |||||||||| |||||||||    
T  32785799 gaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaactgttac 32785886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 32785611 - 32785740
Alignment:
Q  9 gagatgaaagcctcgtgatgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagt 108  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||| || |||||| ||||  | ||| |  |||||||||| |||||| ||  |||| |    
T  32785611 gagatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgatttgagctattgctataacatatctgaagaaggtatttgtcaatt 32785710  T
Q  109 tttaaggagacgttgtaagattagacatttgaa 141  Q
    ||||   ||| ||| ||||||||||||||||||    
T  32785711 ttta---agatgttctaagattagacatttgaa 32785740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 15092081 - 15092276
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||||||| | ||| |||| ||| ||||||||||||| |||| |||||| | |||||  | | ||||||||||||||  ||| |  |  |||||    
T  15092081 tcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcccgagctggag 15092180  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgt 298  Q
    || ||||  |||||| | ||||  ||| |||||||| ||||| |||  |||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  15092181 gtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgt 15092276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 244
Target Start/End: Complemental strand, 7977764 - 7977606
Alignment:
Q  86 tctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttg 185  Q
    ||||| |||||| ||  |||||||||||||||| ||||||| ||||||||||| ||| ||||  |||||| | | |||||| | ||||||||||| || |    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgaatctacgtggaatgaaattcg 7977665  T
Q  186 atgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactc 244  Q
    | ||||  ||| | ||||  |||| |||||||||||||| ||||||||||||| |||||    
T  7977664 acgtttgcaaactcgaggctttgaacttgtcacatacaacagttgatgataaaacactc 7977606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 288
Target Start/End: Complemental strand, 10614762 - 10614577
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggag 202  Q
    |||||||||||||| | ||||||||||||| ||||||||||||||   ||||  |  ||||||  | | |||||||||| ||| |||| | ||  |||||    
T  10614762 tcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggag 10614663  T
Q  203 gtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttact 288  Q
    || |||| ||||||| |||| |  ||| |||||||| ||||| |||| ||||| ||||  ||| |||||||||||||||| |||||    
T  10614662 gtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattact 10614577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 400
Target Start/End: Original strand, 29658929 - 29659123
Alignment:
Q  206 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtg 305  Q
    |||| ||||||| |||| | |||||||||||||||||||||| | || |||| |||||||||||| ||||||||| |||||||||||| |||||    ||    
T  29658929 ttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaatgttgtacgaatg 29659028  T
Q  306 tcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaatttaaggggttgtgatcaagtgtatgctaattttgtt 400  Q
    |||||| ||| ||||| ||  ||||| |  ||||||| || |||| ||  ||| ||||||| ||   ||||||||||||| | |||||| |||||    
T  29659029 tcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttgagatattgtgatcaagtgaaagctaatgttgtt 29659123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 29718956 - 29719116
Alignment:
Q  206 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactggaattttgtaaaggtg 305  Q
    |||| ||||||| |||| |  |||||||||||| |||||||| | || |||| |||||||||||| ||||||||| |||||||||||  |||||    ||    
T  29718956 ttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaaagttgtatgaatg 29719055  T
Q  306 tcacagtgaagggagtgaagtatgtgatgaaaaactgtacacaaccgagggaggtcaattt 366  Q
    |||||| ||| ||||||||  ||||| |  ||||||| |  |||| ||||||| |||||||    
T  29719056 tcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaattt 29719116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 7554554 - 7554471
Alignment:
Q  206 ttgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaactgttactg 289  Q
    |||| ||| ||| ||||||| ||||||||| |||||||| || | ||||||||||||||| |||| ||||| ||||||||||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactg 7554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 19468355 - 19468603
Alignment:
Q  26 atgttttcttctattttccccaatttgcagctgcttgatgtgagagaatgcgaccacatatctgacgaaggtgttattcaagttttaaggagacgttgta 125  Q
    |||||| |||| ||||| ||||||||||||||||||||| |||    |||| |||||||||| ||   |||  ||  |||||||||||||||  ||| ||    
T  19468355 atgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcgga---aggcatttgtcaagttttaaggaggtgttcta 19468451  T
Q  126 agattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaag 225  Q
    | ||||| ||||| ||||||||    |||| | |||||||| | | |||| |||||||||  ||| | ||  ||||||| ||||  |||||| ||||||     
T  19468452 atattaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaa 19468551  T
Q  226 agttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttg 277  Q
     ||||||||| || ||||  |||| ||||||||||  |||||||| ||||||    
T  19468552 ggttgatgatgaaacactttatgtgatctcaaagaactgttgtggacttttg 19468603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 52082678 - 52082582
Alignment:
Q  175 aatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtggg 271  Q
    |||||||||| | ||||| ||||||||||| |||| ||||||| | |||| | |||||||| || || |  |||| |||||||||||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 52082582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 9581314 - 9581276
Alignment:
Q  26 atgttttcttctattttccccaatttgcagctgcttgat 64  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  9581314 atgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 9586882 - 9586844
Alignment:
Q  26 atgttttcttctattttccccaatttgcagctgcttgat 64  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  9586882 atgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 292
Target Start/End: Original strand, 532 - 743
Alignment:
Q  81 acatatctgacgaaggtgttattcaagttttaaggagacgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgcgtggaatgaa 180  Q
    |||||||||| |||||| ||  | ||||| |||||||| ||||||||  |||||||||||| |||||    |||| | |||||||  | | | |||| ||    
T  532 acatatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaataaa 631  T
Q  181 ctttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaagcactccatgtaatctcaaagagttgttgtgggcttttgcaa 280  Q
    |||| | ||| |  |||| ||||| || | ||||||||||||||| || |||||| || ||||| || | ||||| |||| |||||||||||| || |||    
T  632 ctttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaa 731  T
Q  281 ctgttactggaa 292  Q
    ||||||||||||    
T  732 ctgttactggaa 743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 1394 - 1438
Alignment:
Q  103 tcaagttttaaggagacgttgtaagattagacatttgaacttagc 147  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  1394 tcaagttttaaggagatgttataagattagacatttgaacttagc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 88980 - 88943
Alignment:
Q  108 ttttaaggagacgttgtaagattagacatttgaactta 145  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  88980 ttttaaggagatgttgtaagattagacatttgaactta 88943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 39210 - 39164
Alignment:
Q  246 atgtaatctcaaagagttgttgtgggcttttgcaactgttactggaa 292  Q
    |||| ||||||||||||||| ||||||||||||| ||| ||||||||    
T  39210 atgtgatctcaaagagttgtagtgggcttttgcacctgatactggaa 39164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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