View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16202_high_4 (Length: 260)
Name: NF16202_high_4
Description: NF16202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16202_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 43463169 - 43462937
Alignment:
| Q |
11 |
cacagaaaacgattgttggcttattgtaactgcaattgtgatgccagtcgaccatagcggaagaactttgattactgctttcaactcctctacttgtctt |
110 |
Q |
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| T |
43463169 |
cacagaaaacgattgttggcttattgtaactgcaattgtgatgccagttgaccatagcggaagaactttgattactgctttcaactcctctacttgtctt |
43463070 |
T |
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| Q |
111 |
actgtacataaactccatgggtcaattggcatcccattagagtctaaatctttttctctgttcttcataatgcaagccttgttcaagaacctatacaaag |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43463069 |
actgtacataaactccatggatcaattggcatcccattagagtctaaatctttttctctgttcttcataatgcaagccttgttcaagaacctatacaaag |
43462970 |
T |
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| Q |
211 |
aatcaaatttatgttaattgataaatgtccttg |
243 |
Q |
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| T |
43462969 |
aatcaaatttatgttaattgataaatgtccttg |
43462937 |
T |
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