View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16202_low_1 (Length: 516)
Name: NF16202_low_1
Description: NF16202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16202_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Original strand, 30833994 - 30834482
Alignment:
| Q |
12 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30833994 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagagcctggaatgctagatgcagtagaggtg |
30834093 |
T |
|
| Q |
112 |
agcggtcaaacttagaaagatcgctaagaagaaattcacctggatcattgagtgcttcccttacaggtttgaagttcaaaacctgtggttgtttggcctg |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30834094 |
ggcggtcaaacttagaaaaatcgctaagaagaaattcgcctggatcattgagtgcttcccttagaggtttgaagttcaaaacctgtggttgtttggactg |
30834193 |
T |
|
| Q |
212 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttctg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30834194 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttccg |
30834293 |
T |
|
| Q |
312 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactgaagtctcacatcatcaacacaagtaactagagcagggt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
30834294 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactcaagtctctcatcatcaacacaagaaactagagcagggt |
30834393 |
T |
|
| Q |
412 |
tgtcattgctgatggacgcaattattccagtatgtagttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaac |
500 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30834394 |
tgtcattgctaatggacgcaattattccagtatgtggttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaac |
30834482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Complemental strand, 23552606 - 23552118
Alignment:
| Q |
12 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
111 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23552606 |
atgaatttacgtgcatcttcctctgaaccagcgacggggaagcggccaatctcagaaatgaacttatccaaggcctggaatgctagatgcagtagaggtg |
23552507 |
T |
|
| Q |
112 |
agcggtcaaacttagaaagatcgctaagaagaaattcacctggatcattgagtgcttcccttacaggtttgaagttcaaaacctgtggttgtttggcctg |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23552506 |
ggcggtcaaacttagaaaaatcgctaagaagaaatttgcctggatcattgagtgcttcccttagaggtttgaagttcaaaacctgtggttgtttggcctg |
23552407 |
T |
|
| Q |
212 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttctg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
23552406 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctgtagcatttttaatctttcttggctttcgg |
23552307 |
T |
|
| Q |
312 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactgaagtctcacatcatcaacacaagtaactagagcagggt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23552306 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctaaaactcaagtctctcatcatcaacacaagtaactagagcagggt |
23552207 |
T |
|
| Q |
412 |
tgtcattgctgatggacgcaattattccagtatgtagttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaac |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23552206 |
tgtcattgctgatggacgcaattattccagtatgtggttcctctccattgacatcaacaacagtaaactcaggcccaaaatcacaaaac |
23552118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Original strand, 30814983 - 30815471
Alignment:
| Q |
12 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctcagaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30814983 |
atgaatttatgtgcatcttcctctgaaccagcgacggggaagcggcctatctctgaaatgaacttatccagggcctggaatgctagatgcagtagaggtg |
30815082 |
T |
|
| Q |
112 |
agcggtcaaacttagaaagatcgctaagaagaaattcacctggatcattgagtgcttcccttacaggtttgaagttcaaaacctgtggttgtttggcctg |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30815083 |
ggcggtcaaacttagaaaaatcgctaagaagaaattcgcctggatcattgagtgcttcccttagaggtttgaagttcaaaacctttggttgtttggcctg |
30815182 |
T |
|
| Q |
212 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttctg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30815183 |
tgtgacaataccacctttttcataggcaccatagtttgtggtgtcttcttcaagagtgaatgaatatgctctagcatttttaatctttcttggctttccg |
30815282 |
T |
|
| Q |
312 |
tcattcaactctttcataccatgaacttcagagaatacaacaaggtctccatcctgaaactgaagtctcacatcatcaacacaagtaactagagcagggt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
30815283 |
tcattcaactctttcataccatgaacttcagagaacacaacaaggtctccgtcctgaaactcaagtctctcatcatcaacacaagatactacagcagggt |
30815382 |
T |
|
| Q |
412 |
tgtcattgctgatggacgcaattattccagtatgtagttcctctccatcgacatcaacaacagtaaactcaggcccaaaatcacaaaac |
500 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| || || ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
30815383 |
tgtcattgctgatggatgcaattattccagtatgtggttcctccccgtcaacatcaacaactgtaaactcaggtccaaaatcacaaaac |
30815471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University