View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16203_high_2 (Length: 551)

Name: NF16203_high_2
Description: NF16203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16203_high_2
NF16203_high_2
[»] chr4 (8 HSPs)
chr4 (1-534)||(39575770-39576303)
chr4 (1-534)||(39521128-39521658)
chr4 (1-462)||(39510957-39511412)
chr4 (2-526)||(39524630-39525154)
chr4 (1-143)||(39544309-39544451)
chr4 (254-461)||(39543997-39544204)
chr4 (55-125)||(39580719-39580789)
chr4 (307-435)||(39580415-39580543)
[»] chr7 (2 HSPs)
chr7 (2-69)||(3331629-3331696)
chr7 (73-114)||(3331275-3331316)


Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 39576303 - 39575770
Alignment:
Q  1 gaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39576303 gaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgt 39576204  T
Q  101 ttgttaacgcaatagaactctttatgcttccggttcatttaatccctgattcaatgacacgtttctcttacgaagaatctggtgttcgaggaggcttatc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  39576203 ttgttaatgcaatagaactctttatgcttccggttcatttaatccctgattcaatgccacatttctcttacaaagaatctggtgttcgaggaggcttatc 39576104  T
Q  201 tacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgttggtgggggaaccgttgatagaggaactgatactttatcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39576103 tacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgtcggtgggggaaccgttgatagaggaactgatactttatcg 39576004  T
Q  301 agagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctg 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  || ||||| ||||| |||||||||||||||||||||||| ||||    
T  39576003 agagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgatacgtctg 39575904  T
Q  401 atggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagtagcataagttggagtgttcctgt 500  Q
    |||||||||||||||||||||||||||||||||| |  |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39575903 atggtccaaattcaaatcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttctagcagcataagttggagtgttcctgt 39575804  T
Q  501 agagaagaacgtagatcatttacttaggtttcat 534  Q
    ||||||||||||||||||||| ||||||||||||    
T  39575803 agagaagaacgtagatcattttcttaggtttcat 39575770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 39521658 - 39521128
Alignment:
Q  1 gaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgt 100  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  39521658 gaaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcatcatttgcgt 39521559  T
Q  101 ttgttaacgcaatagaactctttatgcttccggttcatttaatccctgattcaatgacacgtttctcttacgaagaatctggtgttcgaggaggcttatc 200  Q
    ||||||| ||||| |||||||||||||| ||  ||||||||||||| |||||| |  ||||||||  ||||   |  |||  || ||| ||   |||| |    
T  39521558 ttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctactggtcgggg---cttaac 39521462  T
Q  201 tacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgttggtgggggaaccgttgatagaggaactgatactttatcg 300  Q
    |||||||| |||||||||||||||||||||| | |||||||| ||||  ||| ||||||| ||||    ||| || ||||||||||| ||||| ||||||    
T  39521461 tacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgatacattatcg 39521362  T
Q  301 agagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctg 400  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || ||||| || |  |||||||||||||||||||||||||||||    
T  39521361 agagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgatacatctg 39521262  T
Q  401 atggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagtagcataagttggagtgttcctgt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  39521261 atggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcaacataagttggagtgttcctgt 39521162  T
Q  501 agagaagaacgtagatcatttacttaggtttcat 534  Q
    ||||||||||||||||||||||||||||||||||    
T  39521161 agagaagaacgtagatcatttacttaggtttcat 39521128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 39511412 - 39510957
Alignment:
Q  1 gaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgt 100  Q
    |||||||||||||| ||| ||||||||||||| || |||||| ||||||| |||||||||||||||||||  ||||||||||||| ||||||| | || |    
T  39511412 gaaaacaccaccaactctcctttagtaaaagaatactacgttcaaatcatcagaaaaagattcaaaatcactttcacacctcaaaaatcatcactcgcat 39511313  T
Q  101 ttgttaacgcaatagaactctttatgcttccggttcatttaatccctgattcaatgacacgtttctcttacgaagaatctggtgttcgaggaggcttatc 200  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||   |||||  ||||| |||||||| ||  ||    |||||||||    
T  39511312 ttgttaacgcaatagaactctttgtgctccccgttcatttaatccctgattcagtgttgcgttttacttacaaagaatctagttctc---caggcttatc 39511216  T
Q  201 tacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgttggtgggggaaccgttgatagaggaactgatactttatcg 300  Q
    || ||||| |||||||||| ||||||||||||| |||||||| ||||||||| ||||||| || || |  |  ||   ||||| | | ||||| |||||     
T  39511215 taattatagtggcggtttaaactcacaacgagctttggaaacgaaacatcgtcttaacgtaggcggtgataatgtcactagagaagccgatacattatca 39511116  T
Q  301 agagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctg 400  Q
    ||||||||||||| ||||||||| ||  ||||||||| |||||| || |||| |   | ||||   |||| ||||  || | |||||||||||  |||||    
T  39511115 agagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttccttt---ggtgatattaaacacgctgcaaatgatgaatctg 39511019  T
Q  401 atggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagt 462  Q
    ||||||||||||||| |  |||||||| |||||| |  |||||| |||||||| ||||||||    
T  39511018 atggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagt 39510957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 2 - 526
Target Start/End: Complemental strand, 39525154 - 39524630
Alignment:
Q  2 aaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgtt 101  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||| | |||||||||| ||    
T  39525154 aaaacaccaccaactctcctttagtaaaagagtattaccttaaaatcatcagaaaaaaattcaaaatcacgttcacacctcaaaaagcatcatttgcctt 39525055  T
Q  102 tgttaacgcaatagaactctttatgcttccggttcatttaatccctgattcaatgacacgtttctcttacgaagaatctggtgttcgaggaggcttatct 201  Q
    || ||| |||||||||||||||||||| || |||||||||||||| || |||||  | | ||||  |||| |||| |||  ||   |  ||  |||||||    
T  39525054 tgctaatgcaatagaactctttatgctccctgttcatttaatccccgactcaatcgcgcttttccattacaaagagtctactg---gcagaaacttatct 39524958  T
Q  202 acttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgttggtgggggaaccgttgatagaggaactgatactttatcga 301  Q
    ||||||| |   | ||| | |||    ||| | |||||||| || |  ||| |||| |||||||| ||||  ||| |||||| |||||||||  |||| |    
T  39524957 acttatagtaatgatttcctctc---tcgatcgttggaaaccaacctccgtcttaatgttggtggcggaattgttaatagagaaactgatacactatcaa 39524861  T
Q  302 gagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctga 401  Q
    |||||||||||||||||||||| ||| ||||| |||  |||||||||||||||   | |||||  |||| ||||  ||||||||||||||||  |||||     
T  39524860 gagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatgaatctgt 39524761  T
Q  402 tggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttcta---gt---agcataagttggagtgtt 495  Q
    || | ||||||||||| |||| || | |||||| |  |||||| |||||| ||||| |||| |||| ||||| |   ||   | ||||||||||||||||    
T  39524760 tgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttggagtgtt 39524661  T
Q  496 cctgtagagaagaacgtagatcatttactta 526  Q
    ||||| ||||||||  |||||||||| ||||    
T  39524660 cctgtggagaagaatatagatcatttcctta 39524630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 39544451 - 39544309
Alignment:
Q  1 gaaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatcatattcacacctcaaacatcatcatttgcgt 100  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||  ||||||||||||||||| ||||||||||    
T  39544451 gaaaacaccaccaactcttctttagtaaaagagtattacgttaaaatcatcagaaaaagattcacaatcactttcacacctcaaacatcttcatttgcgt 39544352  T
Q  101 ttgttaacgcaatagaactctttatgcttccggttcatttaat 143  Q
    || |||| ||| | ||||||||||| || ||  ||||||||||    
T  39544351 tttttaatgcatttgaactctttattctccctcttcatttaat 39544309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 254 - 461
Target Start/End: Complemental strand, 39544204 - 39543997
Alignment:
Q  254 ttaacgttggtgggggaaccgttgatagaggaactgatactttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaa 353  Q
    |||| |||||| | ||||| || ||||||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  39544204 ttaatgttggtagcggaactgtcgatagaaaaaccgatactttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaa 39544105  T
Q  354 tcacttctttggcggtggtattccacgcactgcaaatgatacatctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggc 453  Q
    |   | |||||  | ||  |||  ||||||||||||| |||||| ||| |||||||||||||||  |||||||||||| |||   |||||| |||||| |    
T  39544104 tggttcctttgcagatgaaattaaacgcactgcaaataatacatatgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgcc 39544005  T
Q  454 aaagagag 461  Q
    ||||||||    
T  39544004 aaagagag 39543997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 39580789 - 39580719
Alignment:
Q  55 aaaagattcaaaatcatattcacacctcaaacatcatcatttgcgtttgttaacgcaatagaactctttat 125  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  39580789 aaaagattcaaaatcactttcacacctcaaacctcatcatttgcgtttgttaatgcaatggaactctttat 39580719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 307 - 435
Target Start/End: Complemental strand, 39580543 - 39580415
Alignment:
Q  307 tggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctgatggtc 406  Q
    ||||||||||||||||||||  | ||||||| ||| ||||||||||||   |||||||| |||| ||||  ||||||||||  ||||  |||||||||||    
T  39580543 tggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtc 39580444  T
Q  407 caaattcaaatcaatatattgctccagac 435  Q
    |||||||||||  | |||||| |||||||    
T  39580443 caaattcaaatatacatattggtccagac 39580415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 3331629 - 3331696
Alignment:
Q  2 aaaacaccaccaaatctgctttagtaaaagagtattacgttaaaatcattagaaaaagattcaaaatc 69  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  3331629 aaaacaccaccaactctcctttagtaaaagagtattacgttaaaatcatcataaaaagattcacaatc 3331696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 3331275 - 3331316
Alignment:
Q  73 ttcacacctcaaacatcatcatttgcgtttgttaacgcaata 114  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  3331275 ttcacacctcaaacatcatcatttgcatttgttaatgcaata 3331316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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