View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16203_low_3 (Length: 490)
Name: NF16203_low_3
Description: NF16203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16203_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 195 - 474
Target Start/End: Original strand, 3606850 - 3607132
Alignment:
| Q |
195 |
tcgattagaagagtgatagggcaagtattaaatatattggacaatatgcgatgaaacttggccaaattcgtctgtacgtagataaaagcacaagaaagag |
294 |
Q |
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| T |
3606850 |
tcgattagaagagtgatagagcaagtattatatatattgggcaacatgtgatgaaacttggccaaattcatctgtacgtagataaaaacacaagaaagag |
3606949 |
T |
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| Q |
295 |
gtaagaggggttgaattgtgtt-gtaaactttttcgacaaaagcaactaagaatttc-ttttaaaaaatacctaaaa-tgaatgaacacaaacataaaat |
391 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3606950 |
gtaagaggggttgaattgtgttagtaaactttttcgacaaaagcaactaagaaattccttttaaaaaatacctaaaaatgaatgaacacaaacataaaat |
3607049 |
T |
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| Q |
392 |
agtttaaggaaaaggaagatttacacacagcagccacatccggtcatttcaacttgaagttatattcctagaaggagaattct |
474 |
Q |
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| T |
3607050 |
agtttaaggaaaaggaagatctacacacagcagccacatccggtcatttcaacttgaagttatattcctagaaggagaattct |
3607132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 3606634 - 3606692
Alignment:
| Q |
1 |
ttcagaaactgctagagtgggagtctttggacatttgggtgacaaattaagcctttgtg |
59 |
Q |
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| T |
3606634 |
ttcagaaactgccagagtgggagtctttggacatttgggtgacaaattaagcctttgtg |
3606692 |
T |
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