View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16203_low_4 (Length: 469)
Name: NF16203_low_4
Description: NF16203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16203_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Complemental strand, 41763443 - 41762997
Alignment:
| Q |
19 |
tgtgtgtgtattaattgtctggaagagctgattttgattatttgaattgtaaactgattgggaaacttttacagtattcattgaagaaattatttggcat |
118 |
Q |
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| T |
41763443 |
tgtgtgtgtattgattgtctggaagagctgattttgattatttgaattgtaaactgattgggaaacttttacagtattcattgaaaaaattatttggcat |
41763344 |
T |
|
| Q |
119 |
aatataggttctctccnnnnnnn-gttcaatgcttgcttcaaggatggtgaatatgaaataatgattcatgttatataggagtactttattttgttgcca |
217 |
Q |
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| T |
41763343 |
aatataggttctctccaaaaaaaagttcaatgcttgcttcaaggatggtaaatatgaaataatgattcatgttatataggagtactttattttgttgcca |
41763244 |
T |
|
| Q |
218 |
aattgtcagacccgcttcattattgagtatataatgcattattggtatgatcaaatgcaaaaacctatcaattatattgtcttcatcaataaaatccatg |
317 |
Q |
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| T |
41763243 |
aattgtcagacccgcttcattattgagtatataatgcattattggtatgatcaaatgcaaaaacctatcaattatattgtcttcatcaataaaatccatg |
41763144 |
T |
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| Q |
318 |
catgtacattcatcaataagacttctctaaaccatgccaatcaataatttatctaaaattataagggacgcccttgccacatgatacaaccacacgtgga |
417 |
Q |
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| T |
41763143 |
catgtacattcatcaataagacttctctaaaccatgccaatcaataatttatctaaaattataagggacgcccttgccacatgatacaaccacacgtgga |
41763044 |
T |
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| Q |
418 |
ttcataacattgctatgtagttt---tcattattcttcattcatctc |
461 |
Q |
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| T |
41763043 |
ttcataacattgctatgtagctttgatcattattcttcattcatctc |
41762997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 308
Target Start/End: Complemental strand, 41793682 - 41793561
Alignment:
| Q |
188 |
gttatataggagtactttattttgttgccaaattgtcagacccgcttcattattgagtatata--atgcattattggtatgatcaaatgcaaaaacctat |
285 |
Q |
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| T |
41793682 |
gttatataggagtacttgattttgttgcaaaactcttagacccacttcattattgagtataaaatatgcattattggtacgatcaaatgaaaaatcatat |
41793583 |
T |
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| Q |
286 |
caattatattgtcttcatcaata |
308 |
Q |
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| T |
41793582 |
caattgca-tgtcttcatcaata |
41793561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 41797201 - 41797094
Alignment:
| Q |
357 |
atcaataatttatct--aaaattataagggacgcccttgccacatgatacaaccacacgtggattcataacattgctatgtag-ttttcattattcttca |
453 |
Q |
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| T |
41797201 |
atcaataatttatctctataattataagagccacccttgccacatgatacaaccaaacgtggactcataacattacaacgtagcttttcattattcttca |
41797102 |
T |
|
| Q |
454 |
ttcatctc |
461 |
Q |
| |
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||| |||| |
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| T |
41797101 |
ttcctctc |
41797094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 337 - 461
Target Start/End: Complemental strand, 41793507 - 41793385
Alignment:
| Q |
337 |
gacttctctaaaccatgccaatcaataatttatctaaaattataagggacgcccttgccacatgatacaaccacacgt----ggattcataacattgcta |
432 |
Q |
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||||||||||||||||| ||||||||||||||| | |||||| | |||| |||| ||||||||||||||||| ||| ||||||||| |||| |
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| T |
41793507 |
gacttctctaaaccatgacaatcaataatttat-----actataagagcaaccctcgccatatgatacaaccacacgtacgtggactcataacat-gcta |
41793414 |
T |
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| Q |
433 |
tgtagttttcattattcttcattcatctc |
461 |
Q |
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| T |
41793413 |
tgtagctttcattatccttcattcatctc |
41793385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 41797354 - 41797307
Alignment:
| Q |
225 |
agacccgcttcattattgagtatataatgcattattggtatgatcaaa |
272 |
Q |
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|||||| |||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
41797354 |
agacccacttcattattgactatataatgtattattgatatgatcaaa |
41797307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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