View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16203_low_5 (Length: 394)
Name: NF16203_low_5
Description: NF16203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16203_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 481719 - 481361
Alignment:
| Q |
21 |
tataaccaaaatcttgcatagtgtcccacaaatttctctaataattaagaacttattatacatatacaaaaatagtaaacagtaacttcaatcatgtaca |
120 |
Q |
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| T |
481719 |
tataaccaaaatcttgcatagtgtcccacaaatttctctaataattaagaacttattatacatatacaaaaatagtaaacagtaacttcaatcatgtaca |
481620 |
T |
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| Q |
121 |
tatattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttattgtaacaaatttgactagattatgtggataatctca |
220 |
Q |
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| T |
481619 |
tatattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttattgtaacaaatttgactagattatgtggataatctca |
481520 |
T |
|
| Q |
221 |
ccattaaaatgtatgtattaagctctacaacttattaacattataagggggatcgaatgcattttaatgtttggaggatccaaatccctcaattaataga |
320 |
Q |
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| T |
481519 |
ccattaaaatgtatgtattaagctctacaacttattaacattataagggggatcgaatgcattttaatgtttggaggatccaaatccctcaattaataga |
481420 |
T |
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| Q |
321 |
gtaatgtggactaagcaggtaacagaggttcttccaaaacagtttcataatatgttttt |
379 |
Q |
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| T |
481419 |
gtaatgtggactaagcaggtaacagaggttcttccaaaacagtttcataatatgttttt |
481361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 27489078 - 27489142
Alignment:
| Q |
121 |
tatattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttatt |
185 |
Q |
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| T |
27489078 |
tataatgctcaaaagctatatcaaggaaagcaaaaatagaaatgccaatgtgacattcatttatt |
27489142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 9944444 - 9944483
Alignment:
| Q |
60 |
aataattaagaacttattatacatatacaaaaatagtaaa |
99 |
Q |
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|||||| |||||||||||||||||||||||||||| |||| |
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| T |
9944444 |
aataatgaagaacttattatacatatacaaaaatattaaa |
9944483 |
T |
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