View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16203_low_9 (Length: 268)

Name: NF16203_low_9
Description: NF16203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16203_low_9
NF16203_low_9
[»] chr6 (6 HSPs)
chr6 (19-254)||(11155609-11155844)
chr6 (19-265)||(11196056-11196302)
chr6 (114-254)||(11160566-11160706)
chr6 (114-254)||(11199147-11199287)
chr6 (67-216)||(11132375-11132524)
chr6 (107-156)||(11169976-11170025)
[»] chr8 (1 HSPs)
chr8 (104-157)||(12527925-12527978)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 11155609 - 11155844
Alignment:
Q  19 taagatgccatcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11155609 taagatgccatcatcatcgatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttt 11155708  T
Q  119 tccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgt 218  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||||| |    
T  11155709 tccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattt 11155808  T
Q  219 gggtattccttgggattattatgtccataatccccc 254  Q
     ||||||||| ||||||||| ||| |||||||||||    
T  11155809 tggtattcctagggattattgtgttcataatccccc 11155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 11196056 - 11196302
Alignment:
Q  19 taagatgccatcatcatcgatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttt 118  Q
    |||||||||||| |||||||||||||||| |||| | ||||||||| ||||||||| ||| |||||||||||||| |||||| |||| |||||||||||     
T  11196056 taagatgccatcgtcatcgatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttg 11196155  T
Q  119 tccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgt 218  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||||| |    
T  11196156 tccctagttattttcctctcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattt 11196255  T
Q  219 gggtattccttgggattattatgtccataatccccctatgcttctcc 265  Q
     ||||||||| ||||||||||| ||||||||||||| ||| ||||||    
T  11196256 tggtattcctagggattattatttccataatccccccatgtttctcc 11196302  T

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Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 11160566 - 11160706
Alignment:
Q  114 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||    
T  11160566 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11160665  T
Q  214 aatgtgggtattccttgggattattatgtccataatccccc 254  Q
    ||| | ||||||||| ||||||||| ||| |||||||||||    
T  11160666 aattttggtattcctagggattattgtgttcataatccccc 11160706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 254
Target Start/End: Original strand, 11199147 - 11199287
Alignment:
Q  114 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||  | ||||||||||||||||| |||||| | || |||    
T  11199147 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11199246  T
Q  214 aatgtgggtattccttgggattattatgtccataatccccc 254  Q
    ||| | ||||||||| ||||||||| ||| |||||||||||    
T  11199247 aattttggtattcctagggattattgtgttcataatccccc 11199287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 11132375 - 11132524
Alignment:
Q  67 acctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattg 166  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||||  || ||| |||||| || ||||| || ||||||||||| |||||||||    
T  11132375 acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg 11132474  T
Q  167 atttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaat 216  Q
     ||||||| | || |||||| |||||||| | |||||||  |||||||||    
T  11132475 gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaat 11132524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 11169976 - 11170025
Alignment:
Q  107 agcaagttgttttccctagctattttcctctcaccttcataaacatgaat 156  Q
    ||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||    
T  11169976 agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 11170025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 12527925 - 12527978
Alignment:
Q  104 ccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaatt 157  Q
    ||||||||||||||||| ||||||||  | ||||| || |||||||||||||||    
T  12527925 ccaagcaagttgttttcgctagctatcattctctcgccctcataaacatgaatt 12527978  T

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