View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16204_high_1_N (Length: 342)
Name: NF16204_high_1_N
Description: NF16204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16204_high_1_N |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 27546465 - 27546139
Alignment:
| Q |
14 |
atatcctctaattaatacgactagcgtctttcacttcgcaaagaacagccatcatctgctgcaggagtgacaatgttcatgtctgccgtcctcatatttc |
113 |
Q |
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| T |
27546465 |
atatcctctaattaatacgactagcgtctttcacttcgcaaagaacagccatcatctgctgcaggagtgacaatgttcatgtctgccgtcctcatatttc |
27546366 |
T |
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| Q |
114 |
taccaccctatttgcggatgcaatggccgtcttgcttactagaacttattttcttttctcctctgctttttgtattccatctcattt-tnnnnnnnngga |
212 |
Q |
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| T |
27546365 |
taccaccctttttgcggatgcaatggctgtcttgcttactagaacttattttcttttctcctctgctttttgtatt--atctcatttaaaaaaaaaagga |
27546268 |
T |
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| Q |
213 |
ctttacttgtacacagtgacaacatcaatactttaaaaatggtaatttttagtaaaagtattttctccttttt-catttataccatttttataatatgtg |
311 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
27546267 |
ctttactttt--acagtgacaacatcaatactttaaaaatggtaatttttagtaaaagtattttctcctttttgcatttataccattattataatatgtg |
27546170 |
T |
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| Q |
312 |
taagggattaagttactacccaggattattc |
342 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27546169 |
taagggattaagttactacccaggattattc |
27546139 |
T |
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