View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16205_low_1 (Length: 674)
Name: NF16205_low_1
Description: NF16205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16205_low_1 |
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| [»] scaffold2084 (1 HSPs) |
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| [»] scaffold0971 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 330 - 662
Target Start/End: Complemental strand, 40551406 - 40551074
Alignment:
| Q |
330 |
tccaagtcagacagcacctagtaatcttcgagcaacttctccctcgtatgctcatgtctcactctggcaaagac-gccatgctatcagtctgatccacaa |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40551406 |
tccaagtcagacagcacctagtaatcttcgagcaccttctccctcgtatgctcatgtctcactctggcaaagaccgccatgctatcagtctgatccacaa |
40551307 |
T |
|
| Q |
429 |
aatgagacgccagcctgatagtgcaggcaggttagcctctcctaacttacctgtctctggtttacttgggaatgttagcaatcaatctactataacatcc |
528 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40551306 |
aatgggacgccagcctgatagtgcaggcaggttagcctctcctaacttacctgtctctggtt-acttgggaatgttagcaatcaatctactataacatcc |
40551208 |
T |
|
| Q |
529 |
ccgaacgttatttcccgtttgtcagatgtggctcctgctaacttatccgaatttgggcccaatagcagtaacatggtggctacctcgtcgcatcaagctg |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
40551207 |
ccgaacgttatttcccgtttgtcagatgtggctcctgctaacttattcggatttgggcctaattgcagtaacatggtggctacctcgtcgcatcaagctg |
40551108 |
T |
|
| Q |
629 |
catttccgaatttagcatgttattcagatgatga |
662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
40551107 |
catttccgaatttagcatgttattcagatgatga |
40551074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 2 - 466
Target Start/End: Complemental strand, 40568932 - 40568468
Alignment:
| Q |
2 |
ttccgcagcagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggttcttcttccggtgagcctccttcgaccagtttgcc |
101 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |
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| T |
40568932 |
ttccacagcatttgcatcaactttcgagacaacaagctgctactcgtccattcttggtttctggttcttcttccggtgagtctcctgtgaccagtctgcc |
40568833 |
T |
|
| Q |
102 |
aagtccctccattgctcctaactcgcaacatatgttaccacctggttacaatatgtcaagaactttatccggtgtctctggaagaccacctctaataaac |
201 |
Q |
| |
|
|||||||||||||||||||||||| || || ||| |||||||||||||||||||||| ||||||| ||| ||| ||||| ||||||||| || |||||| |
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| T |
40568832 |
aagtccctccattgctcctaactcacagcacatgctaccacctggttacaatatgtcgggaactttctccagtgcctctgcaagaccacccctcataaac |
40568733 |
T |
|
| Q |
202 |
acctctaggtcgtcaattgcccaagatattcaaggtgttgagttacgtgcaccagcaccacatctccgttcttctagaccctcaatatcggttccacctt |
301 |
Q |
| |
|
|| ||||||| |||||||||| |||||||||||||| |||| ||||||| || || |||||||||| |||||||||||| |||||||| | |||||| | |
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| T |
40568732 |
actactaggtcttcaattgcccgagatattcaaggtggtgagatacgtgcccctgctccacatctccattcttctagaccttcaatatctgctccaccct |
40568633 |
T |
|
| Q |
302 |
ccaatgtcaatcctcttcaacgcgggattccaagtcagacagcacctagtaatcttcgagcaacttctccctcgtatgctcatgtctcactctggcaaag |
401 |
Q |
| |
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||| | ||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||||||| |
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| T |
40568632 |
ccagtttcaatccccttcaacgtgggattccaagtcagacagcagctagtaatcttcgagcaacttctccctcatatgctcatgtctcgccttggcaaag |
40568533 |
T |
|
| Q |
402 |
a-cgccatgctatcagtctgatccacaaaatgagacgccagcctgatagtgcaggcaggttagcct |
466 |
Q |
| |
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| ||||| ||||||||||| |||||| ||||| |||||| |||||| ||||||||||||| ||||| |
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| T |
40568532 |
accgccaagctatcagtctaatccac-aaatgggacgccggcctgacagtgcaggcaggtcagcct |
40568468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 40551712 - 40551438
Alignment:
| Q |
1 |
tttccgcagcagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggttcttcttccggtgagcctccttcgaccagtttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40551712 |
tttccgcagcagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggttcttcttccggtgagcctccttcgaccagtttgc |
40551613 |
T |
|
| Q |
101 |
caagtccctccattgctcctaactcgcaacatatgttaccacctggttacaatatgtcaagaactttatccggtgtctctggaagaccacctctaataaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40551612 |
caagtccctccattgctcctaactcgcaacatatgttaccacctggttacaatatgtcaagaactttctccggtgtctctggaagaccacctctaataaa |
40551513 |
T |
|
| Q |
201 |
cacctctaggtcgtcaattgcccaagatattcaaggtgttgagttacgtgcaccagcaccacatctccgttcttc |
275 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||||||||||| | ||| ||| |||||||||| ||||||| |
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| T |
40551512 |
caccactaggtcttcaattgcccaagatattcaaggtgttgagtgaagtgtcccaacaccacatctttgttcttc |
40551438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 490 - 659
Target Start/End: Complemental strand, 40568468 - 40568299
Alignment:
| Q |
490 |
ttacttgggaatgttagcaatcaatctactataacatccccgaacgttatttcccgtttgtcagatgtggctcctgctaacttatccgaatttgggccca |
589 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||| |||| || ||||||| |||||||||||||||||||| |||||||||||| || |||||||| |
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| T |
40568468 |
ttacttgggaattttagcagtcaatctactaaaacgcccccaaatattatttcacgtttgtcagatgtggctccggctaacttatccagatctgggccca |
40568369 |
T |
|
| Q |
590 |
atagcagtaacatggtggctacctcgtcgcatcaagctgcatttccgaatttagcatgttattcagatga |
659 |
Q |
| |
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||||||||| ||||||| | |||||| ||||||||||||| || |||||||| ||||| |||||||| |
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| T |
40568368 |
atagcagtagtgtggtggccaactcgtcacatcaagctgcatctcagaatttagtatgtttatcagatga |
40568299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2084 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold2084
Description:
Target: scaffold2084; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 345 - 662
Target Start/End: Original strand, 482 - 798
Alignment:
| Q |
345 |
acctagtaatcttcgagcaacttctccctcgtatgctcatgtctcactctggcaaagac-gccatgctatcagtctgatccacaaaatgagacgccagcc |
443 |
Q |
| |
|
||||||||| ||| || |||||||| |||| ||||||| |||||||| || |||||||| |||| ||||| ||||||| |||| || || ||| || |
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|
| T |
482 |
acctagtaacctttgatcaacttcttcctcatatgctcttgtctcacactagcaaagaccgccaaactatcggtctgatgtacaat-tgggatgccggct |
580 |
T |
|
| Q |
444 |
tgatagtgcaggcaggttagcctctcctaactta---cctgtctctggtttacttgggaatgttagcaatcaatctactataacatccccgaacgttatt |
540 |
Q |
| |
|
||| | || |||||| | |||| ||||||||||| |||||| ||||||| ||||||||||||| |||||||||| ||||| | ||||| |||||| |
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|
| T |
581 |
tgacaatgtaggcagttcagccactcctaacttattacctgtcactggttt----gggaatgttagcagtcaatctactttaacaccaccgaatgttatt |
676 |
T |
|
| Q |
541 |
tcccgtttgtcagatgtggctcctgctaacttatccgaatttgggcccaatagcagtaacatggtggctacctcgtcgcatcaagctgcatttccgaatt |
640 |
Q |
| |
|
|| |||||||| ||||||||||| |||||||||| |||||| |||||||||||||| | ||||||| || |||||||| |||||||| |||||||| |
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| T |
677 |
tcacgtttgtcggatgtggctcccaataacttatccagatttggatccaatagcagtaacgtagtggctaacttgtcgcatctagctgcatctccgaatt |
776 |
T |
|
| Q |
641 |
tagcatgttattcagatgatga |
662 |
Q |
| |
|
||| ||||| || |||||||| |
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|
| T |
777 |
tagtatgtttatcggatgatga |
798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0971
Description:
Target: scaffold0971; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 2702 - 2635
Alignment:
| Q |
223 |
caagatattcaaggtgttgagttacgtgcaccagcaccacatctccgttcttctagaccctcaatatc |
290 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| ||||| |||| |||||||||||| ||||||||| |
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|
| T |
2702 |
caagatattcgaggtgttgagttacgtgccccaacaccatatctatgttcttctagacgctcaatatc |
2635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0971; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 662
Target Start/End: Complemental strand, 2581 - 2418
Alignment:
| Q |
499 |
aatgttagcaatcaatctactataacatccccgaacgttatttcccgtttgtcagatgtggctcctgctaacttatccgaatttgggcccaatagcagta |
598 |
Q |
| |
|
|||||| ||| |||||||||| |||||| | ||| |||||||| | |||||| |||||| |||| ||| |||||| |||| || |||||||||||| |
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|
| T |
2581 |
aatgtttgcattcaatctactttaacatgactgaatgttatttcacatttgtccgatgtgtctcccaataagttatccagatttcggaccaatagcagta |
2482 |
T |
|
| Q |
599 |
acatggtggctacctcgtcgcatcaagctgcatttccgaatttagcatgttattcagatgatga |
662 |
Q |
| |
|
|| | ||||||| | ||||||| || ||||| ||||||||||| ||||| || |||||||| |
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|
| T |
2481 |
acgtagtggctaagttatcgcatctagatgcatctccgaatttagtatgtttatctgatgatga |
2418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 15110277 - 15110216
Alignment:
| Q |
10 |
cagttgcatcaactttcgagacaacaagttgctattcgaccattcttggtttctggttcttc |
71 |
Q |
| |
|
||||| ||| ||| ||| |||||| | ||||||| ||||||||||||||||| ||||||||| |
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|
| T |
15110277 |
cagttacattaaccttcaagacaatatgttgctactcgaccattcttggtttttggttcttc |
15110216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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