View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16205_low_2 (Length: 615)
Name: NF16205_low_2
Description: NF16205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16205_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 338 - 600
Target Start/End: Original strand, 35106635 - 35106897
Alignment:
| Q |
338 |
attgactgcaagttaacaatctactactctcaacttctagagttctcaactacatcaaacatgtcgttgattccaagtttctttggtggccgaggccgaa |
437 |
Q |
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|||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106635 |
attgactgcaagttaaaaatctactacgctcaacttccagagttctcaactacatcaaacatgtcgttgattccaagtttctttggtggccgaggccgaa |
35106734 |
T |
|
| Q |
438 |
ggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttccttttaccaattctgcactttctgcttcttcattccctcagga |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
35106735 |
ggagcaacgttttcgatccattctcccttgacgtttgggacccattcaaggattttcctttcaccaattcttcactttctgcttcttcattccctcagga |
35106834 |
T |
|
| Q |
538 |
gaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaa |
600 |
Q |
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| T |
35106835 |
gaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgttcaa |
35106897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 398 - 600
Target Start/End: Complemental strand, 35073165 - 35072963
Alignment:
| Q |
398 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
497 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
35073165 |
atgtcgctgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtgtgggacccattcaaggattttcctt |
35073066 |
T |
|
| Q |
498 |
ttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgtt |
597 |
Q |
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| T |
35073065 |
tcaccaattcttcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgtt |
35072966 |
T |
|
| Q |
598 |
caa |
600 |
Q |
| |
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||| |
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| T |
35072965 |
caa |
35072963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 398 - 597
Target Start/End: Complemental strand, 36296932 - 36296739
Alignment:
| Q |
398 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
497 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| | | |
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| T |
36296932 |
atgtcgctgattccaagtttctttggtggccga------aggagcaacgttttcgatccattctcccttgatgtttgggatccctttaaggatttttcat |
36296839 |
T |
|
| Q |
498 |
ttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgtt |
597 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
36296838 |
ttcccaattctgcactttctgcttcttcatttcctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagcacacgtgtt |
36296739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 398 - 598
Target Start/End: Original strand, 35097526 - 35097717
Alignment:
| Q |
398 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
497 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||| | |
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| T |
35097526 |
atgtcgttgattccaagtttctttggtggcc------gaaggagcaacacttttgatccattctctcttgacgtttgggatcccttcaaggattttccat |
35097619 |
T |
|
| Q |
498 |
ttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcac-caggattgattggaaggagaccccagaagctcatgtgt |
596 |
Q |
| |
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| |||||||| ||||||||| |||||||||||| ||||||||||| |||| ||||| || | | ||||||||||||||||||||||| ||||||| |
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| T |
35097620 |
tctccaattcttcactttctg---cttcattccctcgtgagaattctgcatttgcaagcacacaag-tggattggaaggagaccccagaagcacatgtgt |
35097715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 35107973 - 35108032
Alignment:
| Q |
8 |
attatactcatctacaataatagcaggtaaatacatttgagtgatcaaattagttcccat |
67 |
Q |
| |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
35107973 |
attatactcatctacaataatagcaggtaaatatatctgagtgatcaaattagttcccat |
35108032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 398 - 600
Target Start/End: Complemental strand, 24014658 - 24014462
Alignment:
| Q |
398 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014658 |
atgtcgttgattccaagtttctttggtggccga------aggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
24014565 |
T |
|
| Q |
498 |
ttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgtt |
597 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
24014564 |
taaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagcacatgtgtt |
24014465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 398 - 600
Target Start/End: Complemental strand, 24041215 - 24041019
Alignment:
| Q |
398 |
atgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttgggaccccttcaaggattttcctt |
497 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24041215 |
atgtcgctgattccaagtttctttggtggccga------aggagcaacacttttgatccattttcccttgacgtttgggaccccttcaaggattttcctt |
24041122 |
T |
|
| Q |
498 |
ttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggagaccccagaagctcatgtgtt |
597 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
24041121 |
taaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgcgagcaccaggatcgattggaaggagaccccagaagcacatgtgtt |
24041022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 133 - 304
Target Start/End: Complemental strand, 47991572 - 47991398
Alignment:
| Q |
133 |
gtatgtaattgttcaacttgcactgtttctgagtatacctcttttgatagatgaac--acattgtcatgttccttaaacttcaattccattcctagaaaa |
230 |
Q |
| |
|
||||||||||||||||||| || |||||| |||||||| ||||||||||| ||||| ||| ||||||||| ||||| ||| |||||||||||||||||| |
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| T |
47991572 |
gtatgtaattgttcaactttcaatgtttccgagtatacttcttttgatagttgaacccacaatgtcatgttacttaa-cttaaattccattcctagaaaa |
47991474 |
T |
|
| Q |
231 |
agaatcagagtgtgtcgactaccaaatacttgcatcgattcagctt--aacctatttattatccctctctccattt |
304 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
47991473 |
agaatcagagtgtgtcgacttccaaatacttgcaacaattcagctttgaacctatttattatccctctcttcattt |
47991398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 600
Target Start/End: Original strand, 3122898 - 3123110
Alignment:
| Q |
378 |
agttctcaactacatcaaacatgtcgttgattccaagtttctttggtggccgaggccgaaggagcaacgttttcgatccattctcccttgacgtttggga |
477 |
Q |
| |
|
||||||||||| ||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||||||| |||| ||| ||||||||||| |
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|
| T |
3122898 |
agttctcaacttcatcaaa-atgtcgctgattccaagtttctttggtggccga------atgagcaacgttttcgatcccttcttcctcgacgtttggga |
3122990 |
T |
|
| Q |
478 |
ccccttcaaggattttccttttaccaattctgcactttctgcttcttcattccctcaggagaattctgcttttgtgagcaccaggattgattggaaggag |
577 |
Q |
| |
|
|||||||||||||||||| || |||| |||| | |||||| ||||||||||| |||||||| || ||||||||||| || | || || ||||| |
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|
| T |
3122991 |
ccccttcaaggattttccattctccaactctgtagtttctg---cttcattccctggtgagaattccgcatttgtgagcacaagagtggactgaaaggaa |
3123087 |
T |
|
| Q |
578 |
accccagaagctcatgtgttcaa |
600 |
Q |
| |
|
|| | |||||| ||||||||||| |
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|
| T |
3123088 |
actctagaagcacatgtgttcaa |
3123110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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