View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16205_low_4 (Length: 392)
Name: NF16205_low_4
Description: NF16205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16205_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 43149214 - 43148856
Alignment:
| Q |
20 |
atcactaatgcatattaattcaaacttttggacttcattttatttcaagaaacaagtacatattttttaaagaattctccttgaataatatctacgaaca |
119 |
Q |
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| T |
43149214 |
atcactaatgcatattaattcaaacttttgtacttcattttatttcaagaaacaagtacatattttttaaagaattctccttgaataatatctacgaaca |
43149115 |
T |
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| Q |
120 |
caataactattgaactatccgtttaccacttgagatcattgattttgaaagtatacttcaagatcatctttnnnnnnnncattgctatatgtactctaca |
219 |
Q |
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| T |
43149114 |
caataactattgaactatccgtttaccacttgagatcattgattttgaaagtatacttcaagatcatctttaaaaaaaacattgctatatgtactctaca |
43149015 |
T |
|
| Q |
220 |
taatattattattttttaatctctcgatctaggtacaaatattataagccagataaaattacaagttcttggtcccctttgctgatgtagtagatg--tc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43149014 |
taatattattattttttaatctctcgatctaggtacaaatattataagccagataaaattacaagttcttggtcccctttgctgatgtagtagatgtctc |
43148915 |
T |
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| Q |
318 |
tgtctttcattac-nnnnnnnntatgtctgtcttttagcttaatttttccttgtcctat |
375 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
43148914 |
tgtctttcattacaaaaaaaaatatgtctgtcttttagcttaatttttccttgttctat |
43148856 |
T |
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