View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16205_low_5 (Length: 355)
Name: NF16205_low_5
Description: NF16205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16205_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 111055 - 110724
Alignment:
| Q |
6 |
aatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtga |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111055 |
aatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtga |
110956 |
T |
|
| Q |
106 |
tcttgttgaaaatcgctattattctccgataatttcctgcgcacagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccataccatt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110955 |
tcttgttgaaaatcgctattattctccgataatttcctgcgcacagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccataccatt |
110856 |
T |
|
| Q |
206 |
tgttcttgatttacccatgcgaaagctaaaacctttactcttggcatatcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110855 |
tgttcttgatttacccatgcgaaagctaaaacctttactcttggcatatcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttca |
110756 |
T |
|
| Q |
306 |
aagggctctgaggggatctctgatgatagtct |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
110755 |
aagggctctgaggggatctctgatgatagtct |
110724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 48772453 - 48772285
Alignment:
| Q |
162 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta---------cccatgcgaaagctaaaacctttactcttggcat |
252 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||| || | || | |
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| T |
48772453 |
ccctcctttaaacaaagaatctcttgaccaattaccctaccatccgttcttgatttagtaacacgacccatacgaaagctaaaacctttattcctcgcgt |
48772354 |
T |
|
| Q |
253 |
atcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaagggctctgagggga |
321 |
Q |
| |
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| ||| |||||| |||||||||||||||||||||| ||| | ||||||||||||||| ||| |||||| |
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| T |
48772353 |
accttgtgtagtatttctttacatcttcaattgatgtaaacttcattccttcaaagggatctaagggga |
48772285 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 6 - 337
Target Start/End: Original strand, 20646811 - 20647147
Alignment:
| Q |
6 |
aatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20646811 |
aatattaaaataagctaaaaaacaataataggatatcctataatctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtga |
20646910 |
T |
|
| Q |
106 |
tcttgttgaaaatcgctattattctccgataatttcctgcgcacagttgtaacaatccctcctttgaacaaacaatctcttgaccaattaccataccatt |
205 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20646911 |
tcttgttgaaaatcgctattattttccgataatttcctgcgcacagttgtaacaatccctcctttgaacaaacaatctcttgaccaattatcataccatt |
20647010 |
T |
|
| Q |
206 |
tgttcttgatttacccatgcgaaagctaaaac-----ctttactcttggcatatcttacgtagtaattctttacatcttcaattgatgcaaagtccattc |
300 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20647011 |
tgttcttgatttacccatgcgaaagctaaaacctatactatactcttggcatatcttacgtagtaattctttacatcttcaattgatgcaaagtccattc |
20647110 |
T |
|
| Q |
301 |
cttcaaagggctctgaggggatctctgatgatagtct |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
20647111 |
cttcaaagggctctgaggggatctctgatgatagtct |
20647147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 162 - 337
Target Start/End: Complemental strand, 19329124 - 19328940
Alignment:
| Q |
162 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt---------acccatgcgaaagctaaaacctttactcttggcat |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| || || ||||||||||| || |||| |
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| T |
19329124 |
ccctcctttgaacaaagaatctcttgaccaattaccataccattcgttcttgatttagtaacacaacccatacggaaactaaaacctttgttccccgcat |
19329025 |
T |
|
| Q |
253 |
atcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaagggctctgaggggatctctgatgatagtct |
337 |
Q |
| |
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| ||| ||||||| ||||| ||||||||||||| |||| || ||||||||||||||| || |||||| || ||||| |||||| |
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| T |
19329024 |
accttttatagtaatcctttaaatcttcaattgatacaaactcaattccttcaaagggccctaaggggagctatgatggtagtct |
19328940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 162 - 330
Target Start/End: Complemental strand, 63991 - 63814
Alignment:
| Q |
162 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta---------cccatgcgaaagctaaaacctttactcttggcat |
252 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| || |||||||| |||||||||||| ||||||||||| ||||||||||| ||||||| | |
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| T |
63991 |
ccctcctttgaacaaagaatttcttgaccaatcacaataccattcgttcttgatttagtaacccgacccatgcgaaaactaaaaccttttttcttggcgt |
63892 |
T |
|
| Q |
253 |
atcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaagggctctgaggggatctctgatg |
330 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
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| T |
63891 |
accttacgtagtaatcctttacatcttcaattgatgcaaactccattccttcaaagggctctaaggggagctctgatg |
63814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 22639028 - 22638868
Alignment:
| Q |
162 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta--------cccatgcgaaagctaaaacctttactcttggcata |
253 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| || |||||||||||||||||| |||| |||||||||||||||||| || | ||||| |
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| T |
22639028 |
ccctcctttgaacaaagaatctcctgaccaattatcaatccatttgttcttgatttaataatacgcccaagcgaaagctaaaacctttcttccttgcata |
22638929 |
T |
|
| Q |
254 |
tcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaagggctct |
314 |
Q |
| |
|
||| |||||||| ||| ||||||| | ||||||||| |||||||||||| | |||||| |
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|
| T |
22638928 |
acttgtatagtaattttttgcatcttcgaatgatgcaaaatccattccttcatacggctct |
22638868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 16080351 - 16080189
Alignment:
| Q |
162 |
ccctcctttgaacaaacaatctcttgaccaatt-accataccatttgttcttgattta---------cccatgcgaaagctaaaacctttactcttggca |
251 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||| || | || |
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| T |
16080351 |
ccctccttagaacaaagaatctcttgaccaatttaccctaccatccgttcttgatttagtaacacgacccatacgaaagctaaaacctttattcctcgcg |
16080252 |
T |
|
| Q |
252 |
tatcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaagggctct |
314 |
Q |
| |
|
|| ||| |||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||| |
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|
| T |
16080251 |
taccttgtgtagtatttctttacatcttcaattgatgtaaactccattcattcaaagggctct |
16080189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 38590228 - 38590376
Alignment:
| Q |
166 |
cctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattt---------acccatgcgaaagctaaaacctttactcttggcatatct |
256 |
Q |
| |
|
|||||||||||| |||||| |||||||||| || |||| |||||||||||| ||||| |||||||||||||||||| || | || || || |
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|
| T |
38590228 |
cctttgaacaaagaatctcctgaccaattatcaatccatctgttcttgatttagtaatacgacccaagcgaaagctaaaacctttgttccttgcgtacct |
38590327 |
T |
|
| Q |
257 |
tacgtagtaattctttacatcttcaattgatgcaaagtccattccttca |
305 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||||| ||| |||||||| |
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|
| T |
38590328 |
tgtatagtaattctttgcatcttcaaatgatgcaaaatccgttccttca |
38590376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 320
Target Start/End: Original strand, 44886051 - 44886218
Alignment:
| Q |
162 |
ccctcctttgaacaaacaatctcttgaccaattaccataccatttgttcttgattta---------cccatgcgaaagctaaaacctttactcttggcat |
252 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||| ||||||||||| ||| |||||||| || ||||||||||| ||| || | |
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| T |
44886051 |
ccctcctttgaacaaagaatttcttgaccaattatcataccgtttgttcttgacttagtaacacggcccatgcggaaactaaaacctttgttctgagcgt |
44886150 |
T |
|
| Q |
253 |
atcttacgtagtaattctttacatcttcaattgatgcaaagtccattccttcaaagggctctgagggg |
320 |
Q |
| |
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| ||| ||||||| ||||| | ||||||| |||| ||| ||||||||||||| ||||||| ||||| |
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| T |
44886151 |
accttgtgtagtaactctttgcctcttcaaatgatttaaactccattccttcaatgggctctaagggg |
44886218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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