View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16205_low_6 (Length: 349)
Name: NF16205_low_6
Description: NF16205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16205_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 27295697 - 27296012
Alignment:
| Q |
13 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
112 |
Q |
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| T |
27295697 |
gaacctgtgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgcataattttttatttaatttgttagagatcaaatttttc |
27295796 |
T |
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| Q |
113 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
212 |
Q |
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| T |
27295797 |
attcaatttgatgaaggtatttggattgaatgagagctttgcagcatttgattgaatcataattatttggctttgagagaagattcaattatcggtatga |
27295896 |
T |
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| Q |
213 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
312 |
Q |
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| T |
27295897 |
aatgattttgaagttaaattttctgataagcttgatgaacatataggaatcttttttacctgccatgttttgattctgacaccattcattgtgttatgca |
27295996 |
T |
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| Q |
313 |
tgttgacatccctgac |
328 |
Q |
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| T |
27295997 |
tgttgacatccctgac |
27296012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 14739074 - 14739019
Alignment:
| Q |
20 |
tgaaacttgtatgtttgagaatagtactccttgtactgaacctgatccaccctgca |
75 |
Q |
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| T |
14739074 |
tgaaacttgtatgtttgagaataatactccctgtactgaaccagatccaccctgca |
14739019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 14738722 - 14738661
Alignment:
| Q |
267 |
tttacctgccatgttttgattctgacaccattcattgtgttatgcatgttgacatccctgac |
328 |
Q |
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| T |
14738722 |
tttacctgccatgttttgattctaacaccattcattgagtcgtgtatgttgacatctctgac |
14738661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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