View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16205_low_8 (Length: 253)

Name: NF16205_low_8
Description: NF16205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16205_low_8
NF16205_low_8
[»] chr6 (2 HSPs)
chr6 (14-253)||(7557970-7558207)
chr6 (96-165)||(31559234-31559304)
[»] chr5 (4 HSPs)
chr5 (96-177)||(33818905-33818986)
chr5 (96-176)||(33737404-33737484)
chr5 (101-177)||(10473257-10473333)
chr5 (96-173)||(8462024-8462102)
[»] chr2 (3 HSPs)
chr2 (96-177)||(36401166-36401248)
chr2 (132-169)||(6406909-6406946)
chr2 (134-172)||(31467702-31467740)
[»] chr8 (1 HSPs)
chr8 (94-177)||(35809819-35809903)
[»] chr1 (1 HSPs)
chr1 (97-168)||(3771561-3771632)
[»] chr7 (2 HSPs)
chr7 (96-177)||(18310996-18311078)
chr7 (96-173)||(43380511-43380589)
[»] chr4 (1 HSPs)
chr4 (132-168)||(9031287-9031323)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 7557970 - 7558207
Alignment:
Q  14 cagagactgaaactctagttgctgagtaaaaatcggtctctaatacgtttagag-cgcaaatagtgactaaaaaatccaccgttaaagtataaaatatta 112  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| || ||||| ||||||||||||||  ||||||||||||||||||||    
T  7557970 cagagactgaaactctagttgatgaataaaaattggtctctaatacgtttagagacgtaaataatgactaaaaaatccgtcgttaaagtataaaatatta 7558069  T
Q  113 aaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtccatccctcagacggaggaaatattagttatacattt 212  Q
    ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||    || | ||||||||||||||||||||||||||    
T  7558070 aaaatctttattttttcaactgctacttatttagccacacttaaaatatattcctagatccgtcc----ctgaaacggaggaaatattagttatacattt 7558165  T
Q  213 gattcttacaatatatatttttaaacggcc-aaagaattcaa 253  Q
     ||||||  ||||||||||||||||||||| |||||||||||    
T  7558166 tattcttttaatatatatttttaaacggccaaaagaattcaa 7558207  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 31559234 - 31559304
Alignment:
Q  96 taaagtataaaatattaaaaatc-tttattttttcgattgctacttatttagccacacttgaaatatattc 165  Q
    |||||||||||||||||||||||  | ||| ||||  |||||||||||||| |||||||| |||| |||||    
T  31559234 taaagtataaaatattaaaaatcgatcattatttcagttgctacttatttaaccacacttaaaatgtattc 31559304  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 33818986 - 33818905
Alignment:
Q  96 taaagtataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 177  Q
    |||||||||||||||||||||||  | |||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||    
T  33818986 taaagtataaaatattaaaaatcagtgttttttcggttgcttcttatttagccacacttgaaatgtattcctagattcgtcc 33818905  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 33737404 - 33737484
Alignment:
Q  96 taaagtataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtc 176  Q
    |||||||||||||||||||||||  |  || |||||||||||||||||| ||||||||| |||| ||| ||||||||||||    
T  33737404 taaagtataaaatattaaaaatcgatcattcttcgattgctacttattttgccacacttaaaatgtatgcctagatccgtc 33737484  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 10473257 - 10473333
Alignment:
Q  101 tataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 177  Q
    |||||||||||||||||   | |||||| | ||||||||||||||||||||||| |||| ||||| |||||||||||    
T  10473257 tataaaatattaaaaattaatctttttttggttgctacttatttagccacacttaaaatgtattcatagatccgtcc 10473333  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 8462102 - 8462024
Alignment:
Q  96 taaagtataaaatattaaaaatcttt-attttttcgattgctacttatttagccacacttgaaatatattcctagatcc 173  Q
    |||||||||||||||||||||||  | ||| ||||  |||||||||||||| ||||||||||||| ||||  |||||||    
T  8462102 taaagtataaaatattaaaaatcgatcattatttcagttgctacttatttacccacacttgaaatgtatttatagatcc 8462024  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 36401248 - 36401166
Alignment:
Q  96 taaagtataaaatattaaaaatcttt-attttttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 177  Q
    |||||||||||||||||||||||  | ||| ||||  || ||||||||||||||||||||||||| ||||| |||||||||||    
T  36401248 taaagtataaaatattaaaaatcaatcattgtttcagttcctacttatttagccacacttgaaatgtattcttagatccgtcc 36401166  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 6406946 - 6406909
Alignment:
Q  132 ttgctacttatttagccacacttgaaatatattcctag 169  Q
    |||||||||||||||||||||||||||| |||||||||    
T  6406946 ttgctacttatttagccacacttgaaatgtattcctag 6406909  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 31467702 - 31467740
Alignment:
Q  134 gctacttatttagccacacttgaaatatattcctagatc 172  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  31467702 gctacttatttagccacacttgaaatgtatttctagatc 31467740  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 35809903 - 35809819
Alignment:
Q  94 gttaaagtataaaatattaaaaatctttattt-tttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 177  Q
    |||||||||||||||||||||||||  |  || ||| |||| ||| |||||||||||||||||||||  ||||||||||||||||    
T  35809903 gttaaagtataaaatattaaaaatcgatcgttattttgatttctatttatttagccacacttgaaatgcattcctagatccgtcc 35809819  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 3771632 - 3771561
Alignment:
Q  97 aaagtataaaatattaaaaatctttattttttcgattgctacttatttagccacacttgaaatatattccta 168  Q
    |||||||||||||||||||    | ||| ||| ||||||||||||||||||||||| |||||| ||||||||    
T  3771632 aaagtataaaatattaaaatcaatcattattttgattgctacttatttagccacacctgaaatgtattccta 3771561  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 18310996 - 18311078
Alignment:
Q  96 taaagtataaaatattaaaaatctttattt-tttcgattgctacttatttagccacacttgaaatatattcctagatccgtcc 177  Q
    |||| ||||||||||||||||||  || || ||||| |  |||||||||||||||||||| |||| |||||||| ||||||||    
T  18310996 taaaatataaaatattaaaaatcgataattatttcggtaactacttatttagccacacttaaaatgtattcctaaatccgtcc 18311078  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 43380589 - 43380511
Alignment:
Q  96 taaagtataaaatattaaaaatcttt-attttttcgattgctacttatttagccacacttgaaatatattcctagatcc 173  Q
    ||||||||||||||||||| |||  | ||| ||||  ||||||||||||||| || ||||||||| |||||||||||||    
T  43380589 taaagtataaaatattaaagatcgatcattatttcagttgctacttatttagtcatacttgaaatgtattcctagatcc 43380511  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 9031323 - 9031287
Alignment:
Q  132 ttgctacttatttagccacacttgaaatatattccta 168  Q
    ||||||||||||||||||||| | |||||||||||||    
T  9031323 ttgctacttatttagccacacataaaatatattccta 9031287  T

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