View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16206_low_1 (Length: 476)

Name: NF16206_low_1
Description: NF16206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16206_low_1
NF16206_low_1
[»] chr2 (6 HSPs)
chr2 (5-476)||(43131388-43131835)
chr2 (403-465)||(36766699-36766764)
chr2 (420-475)||(44065744-44065799)
chr2 (415-472)||(1870509-1870566)
chr2 (430-475)||(38193709-38193754)
chr2 (419-471)||(33635555-33635607)
[»] chr1 (8 HSPs)
chr1 (415-475)||(27536-27596)
chr1 (403-469)||(35873495-35873561)
chr1 (406-474)||(39238870-39238938)
chr1 (415-471)||(31160768-31160824)
chr1 (415-474)||(35876788-35876847)
chr1 (415-471)||(11449102-11449158)
chr1 (420-472)||(28490669-28490721)
chr1 (424-472)||(33148155-33148203)
[»] chr8 (7 HSPs)
chr8 (415-475)||(40607336-40607396)
chr8 (415-471)||(4989737-4989793)
chr8 (415-471)||(33621408-33621464)
chr8 (415-471)||(34678222-34678278)
chr8 (415-472)||(3137441-3137498)
chr8 (415-468)||(10451944-10451997)
chr8 (415-475)||(18131229-18131289)
[»] scaffold0299 (1 HSPs)
scaffold0299 (415-472)||(18031-18088)
[»] chr6 (4 HSPs)
chr6 (415-468)||(2613367-2613420)
chr6 (415-472)||(28048756-28048813)
chr6 (415-472)||(32800246-32800303)
chr6 (415-471)||(2398050-2398106)
[»] chr5 (7 HSPs)
chr5 (415-471)||(6102870-6102926)
chr5 (415-471)||(12036323-12036379)
chr5 (433-475)||(28511182-28511224)
chr5 (415-471)||(16802069-16802125)
chr5 (415-471)||(30293838-30293894)
chr5 (420-472)||(30840618-30840670)
chr5 (420-472)||(35290678-35290730)
[»] chr4 (8 HSPs)
chr4 (416-472)||(32325065-32325121)
chr4 (415-471)||(53142823-53142879)
chr4 (415-474)||(34236220-34236278)
chr4 (415-472)||(45921354-45921411)
chr4 (419-472)||(55090821-55090874)
chr4 (415-471)||(4860159-4860215)
chr4 (415-475)||(16831116-16831176)
chr4 (415-475)||(51100041-51100101)
[»] chr3 (4 HSPs)
chr3 (415-474)||(41287898-41287957)
chr3 (415-468)||(34228273-34228326)
chr3 (416-472)||(25958075-25958131)
chr3 (424-472)||(29032453-29032501)
[»] chr7 (9 HSPs)
chr7 (415-469)||(8656339-8656393)
chr7 (426-472)||(41760365-41760411)
chr7 (415-468)||(25780245-25780298)
chr7 (419-472)||(47537466-47537519)
chr7 (415-475)||(21164669-21164729)
chr7 (76-112)||(33931910-33931946)
chr7 (415-467)||(39386951-39387003)
chr7 (415-475)||(39786467-39786527)
chr7 (406-474)||(47445362-47445430)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 5 - 476
Target Start/End: Original strand, 43131388 - 43131835
Alignment:
Q  5 caatcactagccaaacaattgttctatactcgacttgccaggtttgttgcatatatatatgaatgaattacgtacaactaaaatgagacacttataatga 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||               
T  43131388 caatcactggccaaacaattgttctatactcgacttgccaggtttgttgcatatatat--gaatgaattacgtacaactaaaatgagac----------- 43131474  T
Q  105 gacggaggaaatatttattgaacttgttannnnnnnnnnnnnnnngcagtattcctcatcgttacgattcattctggaaggaattggactctgctaagaa 204  Q
       ||||||||||| ||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131475 ---ggaggaaatatatattgaacttgttattttgtttta-------cagtattcctcatcgttacgattcattctggaaggaattggactctgctaagaa 43131564  T
Q  205 cataatgaataacatgaatgagttaaacatggagaaaattggcacagctgctttattcggacttgagtgttatctttggtattgtgggggtgagatagtt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131565 cataatgaataacatgaatgagttaaacatggagaaaattggcacagctgctttattcggacttgagtgttatctttggtattgtgggggtgagatagtt 43131664  T
Q  305 ggcagaggatttacattcactggctactatgtttaagtggagtggaactatccaataagacattactgctgctagtttaagggtcttgctactagttaaa 404  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43131665 ggcagaggatttacatttactggctactatgtttaagtggagtggaactatccaataagacattactgctgctagtttaagggtcttgctactagtt-aa 43131763  T
Q  405 agaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacc 476  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131764 agaatccttgaataaaaattttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactacc 43131835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 465
Target Start/End: Original strand, 36766699 - 36766764
Alignment:
Q  403 aaagaatccttgaataaaaaatttgtcttaaaaatgt---aagtttatacttttgatcaagtaata 465  Q
    ||||||||| ||||||||||||||||||| |||||||   |||||  |||||||||||||||||||    
T  36766699 aaagaatccatgaataaaaaatttgtcttgaaaatgtaacaagttgttacttttgatcaagtaata 36766764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 44065744 - 44065799
Alignment:
Q  420 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||||||| ||| ||||||||||||| ||||||| || |||||||||| |||||||    
T  44065744 aaaatttgccttgaaaatgtaagtttttacttttaatgaagtaataatcacactac 44065799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 1870509 - 1870566
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||| |||||||||||| ||||| |||| ||  ||||||||| |||||||||||||||    
T  1870509 aatagaaaatttgtcttgaaaatataagctttgacttttgattaagtaataattacac 1870566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Original strand, 38193709 - 38193754
Alignment:
Q  430 ttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||||||||||||||| || ||||||| || |||||||||||||||    
T  38193709 ttaaaaatgtaagtttttatttttgatgaaataataattacactac 38193754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 471
Target Start/End: Complemental strand, 33635607 - 33635555
Alignment:
Q  419 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    ||||||||||||| ||||| ||| |||  ||||||||| ||||||||||||||    
T  33635607 aaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattaca 33635555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 475
Target Start/End: Complemental strand, 27596 - 27536
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    ||||||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||||||    
T  27596 aataaaaaatttgtctttaaaatataagttttgacttttgattaagtaataattacactac 27536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 35873561 - 35873495
Alignment:
Q  403 aaagaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 469  Q
    |||||||| || ||||||||||||||||| ||||||||| ||| ||||||| || ||||||||||||    
T  35873561 aaagaatctttaaataaaaaatttgtcttcaaaatgtaaatttttacttttcatgaagtaataatta 35873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 39238938 - 39238870
Alignment:
Q  406 gaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta 474  Q
    |||||| | |||||||| ||| |||||||||||||||||  ||| |||||||||||||| |||||||||    
T  39238938 gaatccataaataaaaattttctcttaaaaatgtaagttgttacatttgatcaagtaatgattacacta 39238870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 31160824 - 31160768
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| |||||||||||||||||| ||| |||  ||||||||| ||||||||||||||    
T  31160824 aatagaaaatttgtcttaaaaatataaattttgacttttgattaagtaataattaca 31160768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 474
Target Start/End: Complemental strand, 35876847 - 35876788
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta 474  Q
    ||||||||||||||||||||||| |||||||  ||||||||| ||| || ||| ||||||    
T  35876847 aataaaaaatttgtcttaaaaatataagttttaacttttgattaaggaacaataacacta 35876788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 11449158 - 11449102
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    ||||||||||||||||||||||| |||  |  || ||||||||| ||||||||||||    
T  11449158 aataaaaaatttgtcttaaaaatataatatgttaattttgatcatgtaataattaca 11449102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 28490669 - 28490721
Alignment:
Q  420 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||||||||| |||||||  | ||||| | |||||||||||||||    
T  28490669 aaaatttgtcttaaaaatataagttttgatttttgcttaagtaataattacac 28490721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 472
Target Start/End: Original strand, 33148155 - 33148203
Alignment:
Q  424 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||||| |||| |  |||||||||||||||||| |||||||    
T  33148155 tttgtcttaaaaatataagatgctacttttgatcaagtaatgattacac 33148203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 475
Target Start/End: Complemental strand, 40607396 - 40607336
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| ||||||||||||||||||    
T  40607396 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacactac 40607336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 4989793 - 4989737
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    ||||||||||||||||| ||||| |||||||  | |||||||||||||| |||||||    
T  4989793 aataaaaaatttgtcttgaaaatataagttttgatttttgatcaagtaacaattaca 4989737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 33621464 - 33621408
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||||||| |||||||||||||| |||  || |||||||||||||||||| ||||||    
T  33621464 aataaaaattttgtcttaaaaatataaaattttacttttgatcaagtaattattaca 33621408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 34678222 - 34678278
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| |||||||||||| |||||||||  |  |||||||||||||||||||||||||    
T  34678222 aatagaaaatttgtcttgaaaatgtaaaatgttacttttgatcaagtaataattaca 34678278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 3137498 - 3137441
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||| ||| |||||||| |||||||||| |  |||||||||||||||||| |||||||    
T  3137498 aatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacac 3137441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 468
Target Start/End: Complemental strand, 10451997 - 10451944
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 468  Q
    |||||||| ||||| |||||||| |||||||  ||||||||| |||||||||||    
T  10451997 aataaaaattttgtattaaaaatataagttttgacttttgattaagtaataatt 10451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 475
Target Start/End: Complemental strand, 18131289 - 18131229
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||| |||||||||||| ||||| |||||||  |||  |||| ||||||||||||||||||    
T  18131289 aatagaaaatttgtcttgaaaatataagttttgactactgattaagtaataattacactac 18131229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 18031 - 18088
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||| ||||||| |||||||||| |||||||  ||||||||| |||||||||||||||    
T  18031 aatagaaaatttatcttaaaaatataagttttgacttttgattaagtaataattacac 18088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 2613367 - 2613420
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 468  Q
    |||| ||| |||||||||||||| ||||||  ||||||||||||||||||||||    
T  2613367 aatagaaattttgtcttaaaaatataagttgctacttttgatcaagtaataatt 2613420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 28048756 - 28048813
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||| ||||||||| |||||||| |||||||  |||||| || |||||||||||||||    
T  28048756 aatagaaaatttgttttaaaaatataagttttgacttttaattaagtaataattacac 28048813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 32800303 - 32800246
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||| |||||||||||||||||| |||||||  | ||||||| || ||||||||||||    
T  32800303 aatagaaaatttgtcttaaaaatataagttttgatttttgattaaataataattacac 32800246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 2398106 - 2398050
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| ||||||| |||| ||||| |||||||  ||||||||| ||||||||||||||    
T  2398106 aatagaaaatttatcttgaaaatataagttttgacttttgattaagtaataattaca 2398050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 6102926 - 6102870
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| ||||||||||||||    
T  6102926 aatagaaaatttgtcttcaaaatataagttttgacttttgattaagtaataattaca 6102870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 12036323 - 12036379
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| |||||||||||| ||||| |||||||  ||||||||| ||||||||||||||    
T  12036323 aatagaaaatttgtcttgaaaatataagttttgacttttgattaagtaataattaca 12036379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 475
Target Start/End: Original strand, 28511182 - 28511224
Alignment:
Q  433 aaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    ||||||||||||| |||||||||| || |||||||||||||||    
T  28511182 aaaatgtaagtttttacttttgatgaattaataattacactac 28511224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 16802125 - 16802069
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| |||||||||||| ||||| ||| |||  ||||||||| ||||||||||||||    
T  16802125 aatagaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattaca 16802069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 30293838 - 30293894
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| ||| |||||||||||||| |||| |  |||||||||||||||||| ||||||    
T  30293838 aatagaaattttgtcttaaaaatataagatgttacttttgatcaagtaatgattaca 30293894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 30840618 - 30840670
Alignment:
Q  420 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||| ||||| |||| |  |||||||||||||||||| |||||||    
T  30840618 aaaatttgtcttgaaaatataagatgttacttttgatcaagtaatgattacac 30840670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 35290730 - 35290678
Alignment:
Q  420 aaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||||||||| || ||||  ||||||||| |||||||| ||||||    
T  35290730 aaaatttgtcttaaaaatatatgttttgacttttgattaagtaatatttacac 35290678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 32325121 - 32325065
Alignment:
Q  416 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||||||| ||||| ||| |||  ||||||||| |||||||||||||||    
T  32325121 ataaaaaatttgtcttgaaaatataatttttgacttttgattaagtaataattacac 32325065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 53142879 - 53142823
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    ||||||||||||||| | ||||| |||||||  ||||||||| ||||||||||||||    
T  53142879 aataaaaaatttgtcatgaaaatataagttttaacttttgattaagtaataattaca 53142823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 474
Target Start/End: Complemental strand, 34236278 - 34236220
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta 474  Q
    ||||||||||||||| | ||||| |||||||| ||||||||| |||| ||||||||||||    
T  34236278 aataaaaaatttgtcctgaaaatataagttta-acttttgattaagtgataattacacta 34236220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 472
Target Start/End: Original strand, 45921354 - 45921411
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||| |||||||||||| ||||| |||||||  ||| ||||| |||||||||||||||    
T  45921354 aatagaaaatttgtcttgaaaatataagttttgactattgattaagtaataattacac 45921411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 55090874 - 55090821
Alignment:
Q  419 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    ||||||||||||| ||||| |||||||  ||||||||| |||| ||||||||||    
T  55090874 aaaaatttgtcttgaaaatataagttttgacttttgattaagttataattacac 55090821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 4860215 - 4860159
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattaca 471  Q
    |||| ||||||||| || ||||| |||||||  ||||||||| ||||||||||||||    
T  4860215 aatagaaaatttgttttgaaaatataagttttgacttttgattaagtaataattaca 4860159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 16831116 - 16831176
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||| ||||||||| |||||||| ||| |||  ||||||||| |||||||||||| |||||    
T  16831116 aatataaaatttgttttaaaaatataaattttgacttttgattaagtaataattatactac 16831176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 51100041 - 51100101
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||| ||||||| | || ||||| |||||||  ||||||||| ||||||||||||||||||    
T  51100041 aatagaaaatttattttgaaaatataagttttaacttttgattaagtaataattacactac 51100101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 474
Target Start/End: Original strand, 41287898 - 41287957
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta 474  Q
    |||| ||||||||| |||||||| |||||||  | ||||||| |||||||||||||||||    
T  41287898 aatagaaaatttgttttaaaaatataagttttgatttttgattaagtaataattacacta 41287957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 34228273 - 34228326
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 468  Q
    ||||||||||||||||||||||| ||| |||  ||||||||| || ||||||||    
T  34228273 aataaaaaatttgtcttaaaaatataaattttgacttttgattaaataataatt 34228326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 25958075 - 25958131
Alignment:
Q  416 ataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||||||||||||| |||| |  |||||||||| ||||||  |||||||    
T  25958075 ataaaaaatttgtcttaaaaatataagatgttacttttgataaagtaacgattacac 25958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 29032501 - 29032453
Alignment:
Q  424 tttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||||| |||| |  |||||||||||||||||| |||||||    
T  29032501 tttgtcttaaaaatataagatgttacttttgatcaagtaatgattacac 29032453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 469
Target Start/End: Complemental strand, 8656393 - 8656339
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatta 469  Q
    |||| |||||||||||||||||  |||||||  ||||||||| ||||||||||||    
T  8656393 aatagaaaatttgtcttaaaaaaataagttttaacttttgattaagtaataatta 8656339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 41760365 - 41760411
Alignment:
Q  426 tgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    |||||||||||||||||||| || |||| |||||||||| |||||||    
T  41760365 tgtcttaaaaatgtaagtttttattttttatcaagtaattattacac 41760411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 468
Target Start/End: Complemental strand, 25780298 - 25780245
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataatt 468  Q
    |||||||||||||||| |||||| |||||||  |||||| || |||||||||||    
T  25780298 aataaaaaatttgtctgaaaaatataagttttgacttttaattaagtaataatt 25780245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 47537519 - 47537466
Alignment:
Q  419 aaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacac 472  Q
    ||||||||||||| ||||| |||||||  | ||||||| |||||||||||||||    
T  47537519 aaaaatttgtcttgaaaatataagttttgatttttgattaagtaataattacac 47537466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 475
Target Start/End: Complemental strand, 21164729 - 21164669
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||| ||| |||| ||| |||||| |||||| || ||||||| ||||||||||||||||||    
T  21164729 aatagaaattttgacttgaaaatgcaagtttttatttttgatgaagtaataattacactac 21164669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 33931946 - 33931910
Alignment:
Q  76 gtacaactaaaatgagacacttataatgagacggagg 112  Q
    |||||||| |||||||||||||||||||| |||||||    
T  33931946 gtacaactcaaatgagacacttataatgaaacggagg 33931910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 39387003 - 39386951
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataat 467  Q
    |||||||||||| || ||||||| ||| |||  ||||||||||||||||||||    
T  39387003 aataaaaaatttatcctaaaaatataaattttaacttttgatcaagtaataat 39386951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 39786467 - 39786527
Alignment:
Q  415 aataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacactac 475  Q
    |||| |||| ||||||| ||||| |||||||  ||||||||| || |||||||||||||||    
T  39786467 aatagaaaacttgtcttgaaaatataagttttaacttttgattaaataataattacactac 39786527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 474
Target Start/End: Original strand, 47445362 - 47445430
Alignment:
Q  406 gaatccttgaataaaaaatttgtcttaaaaatgtaagtttatacttttgatcaagtaataattacacta 474  Q
    |||||||| |||| ||| ||||  || ||||| ||||||| |||||||||| |||||||||||| ||||    
T  47445362 gaatccttaaatagaaattttgctttgaaaatataagtttttacttttgatgaagtaataattaaacta 47445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University