View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16207_high_1 (Length: 609)

Name: NF16207_high_1
Description: NF16207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16207_high_1
NF16207_high_1
[»] chr2 (8 HSPs)
chr2 (6-537)||(17895452-17895983)
chr2 (204-594)||(17846719-17847097)
chr2 (196-591)||(17886988-17887371)
chr2 (248-594)||(17859778-17860109)
chr2 (344-594)||(17907914-17908161)
chr2 (196-591)||(17819332-17819712)
chr2 (501-594)||(17919226-17919319)
chr2 (95-166)||(43585945-43586016)
[»] chr6 (2 HSPs)
chr6 (76-166)||(785384-785474)
chr6 (100-160)||(1334714-1334774)
[»] chr5 (2 HSPs)
chr5 (108-167)||(7621169-7621228)
chr5 (129-165)||(9031879-9031915)
[»] chr4 (2 HSPs)
chr4 (76-166)||(37496744-37496834)
chr4 (95-163)||(13307925-13307993)
[»] chr8 (1 HSPs)
chr8 (130-167)||(10497744-10497781)
[»] chr7 (1 HSPs)
chr7 (95-168)||(25956493-25956565)
[»] chr1 (1 HSPs)
chr1 (99-163)||(16925683-16925747)


Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 6 - 537
Target Start/End: Complemental strand, 17895983 - 17895452
Alignment:
Q  6 aggagcacagacactgaacacgacactgatacgttcgtacggataaaattttaagaaaatgagatgattcaatcacaagtgccgatgtggtgttggtgtc 105  Q
    |||| |||||||||||||||||||||||||||     ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17895983 aggatcacagacactgaacacgacactgatacacctataccgataaaattttgagaaaatgagatgattcaatcacaagtgccgatgtggtgttggtgtc 17895884  T
Q  106 gaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagccttcaagttgtcgagacagaccccattcttgccttgga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  17895883 gaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgtccatgcaacagagccttcaagttgtcgagacagaccccaagcttgccttgga 17895784  T
Q  206 aacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataaat 305  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895783 aacttgtgtcacaaatcgacaagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataaat 17895684  T
Q  306 cctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcag 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17895683 cctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcag 17895584  T
Q  406 gtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcgtcgacatttgt 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17895583 gtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatccagtgattgtaagagcggtgtagcgtcgacatttgt 17895484  T
Q  506 ttgatcatattgacatgaaggattattgtata 537  Q
    ||||||||||||||||||||| ||||||||||    
T  17895483 ttgatcatattgacatgaagggttattgtata 17895452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 204 - 594
Target Start/End: Complemental strand, 17847097 - 17846719
Alignment:
Q  204 gaaacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataa 303  Q
    ||||||||||||||||||| | || ||||| ||| | |  | | ||||| |||||||||||||| | || ||| |||||| |||||||||||||||||||    
T  17847097 gaaacttgtgtcacaaatcgaagaacagatcgtttaacatactcctttatctgattgctgtaatcatttccaacatcatgaaatctatcccaaagcataa 17846998  T
Q  304 atcctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatc 403  Q
     ||||||| || |           |||||  || ||||  |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  17846997 ttcctccatagttcg---------aagttggtttaatgaaaggaagaaccttagaaatgagatcatctggtggtatataaccaccataaggagctgcatc 17846907  T
Q  404 aggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcgtcgacattt 503  Q
    |||||||||||||||||||  ||||||| || ||   | ||||  | || | || |||||| ||| ||||||||||||||||  |||||| ||    |||    
T  17846906 aggtgctgctggtagtcccatgaaaacggtatta---tttggtaaagctaaagatgtccaatcattccatgattgtaagagcaatgtagcatctgagttt 17846810  T
Q  504 gtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagtgat 594  Q
     ||  |||||||||||||| |||||||||||| ||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  17846809 attatatcatattgacatggaggattattgtagaattgaacaagtatataatcaaacaagccagttttgatagctttgtcaaggtagtgat 17846719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 196 - 591
Target Start/End: Complemental strand, 17887371 - 17886988
Alignment:
Q  196 ttgccttggaaacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatccca 295  Q
    |||||| |||||||||||||||||||| | ||  |||| ||| | |  | | ||||| |||||||||||||| | || ||| |||||| |||||||||||    
T  17887371 ttgcctcggaaacttgtgtcacaaatcgaagaatagatcgtttaacgtactcctttatctgattgctgtaatcatttccaacatcatgaaatctatccca 17887272  T
Q  296 aagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccagga 395  Q
    |||||||| ||||||| || |         | |||||  || ||||  |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  17887271 aagcataattcctccatagtt---------ggaagttggtttaatgaaaggaagaaccttggaaatgagatcatttggtggtatataaccaccactagga 17887181  T
Q  396 gctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcgt 495  Q
    ||||||| |||||||||||||||||||  ||||||| || ||   | |||| || || | || |||||||||| ||||||||||||||||  |||||| |    
T  17887180 gctgcattaggtgctgctggtagtcccatgaaaacggtatta---tttggtagagctaaagatgtccaagcattccatgattgtaagagcaatgtagcat 17887084  T
Q  496 cgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagt 591  Q
    |    ||| || ||||||||||||||| ||| |||||||| ||||  ||||  | ||||| ||| |||||||||||||||||||||||||||||||    
T  17887083 ctgagtttattagatcatattgacatggagggttattgtagaattgaacaaggacataatcaaataagccagttttgatagctttgtcaaggtagt 17886988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 248 - 594
Target Start/End: Original strand, 17859778 - 17860109
Alignment:
Q  248 ctttacctgattgctgtaattactttcaatatcatggaatctatcccaaagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgagga 347  Q
    ||||| |||||||||||||| | || ||| |||||| ||||||||||||||||||| ||||||| || | ||        |||| | || ||||  ||||    
T  17859778 ctttatctgattgctgtaatcatttccaacatcatgaaatctatcccaaagcataactcctccatagtt-tg--------aagtctgtttaatgatagga 17859868  T
Q  348 agaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtg 447  Q
    |||||||||||||||||||||||||||||||||||||||  |||||   |||||||||||| |||||||||||||  ||||||| || ||   | ||||     
T  17859869 agaaccttagaaatgagatcatttggtggtatataaccattaccag---ctgcatcaggtgatgctggtagtcccatgaaaacggtatta---tttggta 17859962  T
Q  448 gaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcgtcgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaa 547  Q
    ||||||| || |||||| ||| |||||||| ||||||   |||||| ||  |||||| ||||| ||||||||||||||| |||||||| ||||  ||||     
T  17859963 gaactgaagatgtccaatcattccatgattttaagaggtctgtagcatccccatttgcttgattatattgacatgaagggttattgtagaattgaacaag 17860062  T
Q  548 tatataattaaacaagccagttttgatagctttgtcaaggtagtgat 594  Q
    || ||||| ||||||||||||||| ||||||||||||||||||||||    
T  17860063 tacataatcaaacaagccagttttaatagctttgtcaaggtagtgat 17860109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 344 - 594
Target Start/End: Complemental strand, 17908161 - 17907914
Alignment:
Q  344 aggaagaaccttagaaatgagatcatttggtggtatataaccaccaccaggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttct 443  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||| |||||| ||||||||||||  ||||||| || ||   | |    
T  17908161 aggaagaaccttagaaatgagatcatctggtggtatataaccaccactatgagatgcattaggtgccgctggtagtcccatgaaaacggtatta---ttt 17908065  T
Q  444 ggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcgtcgacatttgtttgatcatattgacatgaaggattattgtataatttga 543  Q
    ||| ||  | | || |||||||||| |||||||||||| |||  |||||| |     ||| |||||||||||||||||| |||||||||||| ||||  |    
T  17908064 ggtagagataaagatgtccaagcattccatgattgtaaaagcaatgtagcatttgagtttatttgatcatattgacatggaggattattgtagaattgaa 17907965  T
Q  544 caaatatataattaaacaagccagttttgatagctttgtcaaggtagtgat 594  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  17907964 caagtatataatcaaacaagccagttttgatagctttgtcaaggtagtgat 17907914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 196 - 591
Target Start/End: Original strand, 17819332 - 17819712
Alignment:
Q  196 ttgccttggaaacttgtgtcacaaatccacgagcagattgttcatcccagtgctttacctgattgctgtaattactttcaatatcatggaatctatccca 295  Q
    |||||| |||||||| ||||||||||| | || ||||| ||| | |  | | ||||| |||||||||||||| | |||||||||||||   |||||||||    
T  17819332 ttgcctcggaaacttttgtcacaaatcgaagaacagatcgtttaacatactcctttatctgattgctgtaatcattttcaatatcatgagctctatccca 17819431  T
Q  296 aagcataaatcctccacagctatgggtagagcaagtttcttcaatgtgaggaagaaccttagaaatgagatcatttggtggtatataaccaccaccagga 395  Q
    ||||| || ||||||| || | ||        |||| | || ||||  |||||||||||||||||||||||||| |||||| ||||||||  ||| ||      
T  17819432 aagcacaactcctccatagtt-tg--------aagtctgtttaatgataggaagaaccttagaaatgagatcatctggtgggatataaccttcactag-- 17819520  T
Q  396 gctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcgt 495  Q
     |||||||||||| |||||||||||||  ||||||  || ||   | |||| ||||||| || |||||||||| |||||||| ||||||   |||||| |    
T  17819521 -ctgcatcaggtgatgctggtagtcccatgaaaacagtatta---tttggtagaactgaagatgtccaagcattccatgattttaagaggtctgtagcat 17819616  T
Q  496 cgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagt 591  Q
    |    ||| |||||||||||||||||| ||  |||| ||| ||||  |||| |||||||| |||||||||||||||||||||||||||||||||||    
T  17819617 ctgagtttatttgatcatattgacatggagtgttatggtagaattgaacaagtatataatcaaacaagccagttttgatagctttgtcaaggtagt 17819712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 594
Target Start/End: Complemental strand, 17919319 - 17919226
Alignment:
Q  501 tttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagtgat 594  Q
    ||||||||||||||||||||   ||| |||||||| ||||| |||| |  ||||| |||  |||||| ||||||||||||||||||||| ||||    
T  17919319 tttgtttgatcatattgacaattagggttattgtagaatttaacaattgcataatcaaaagagccagatttgatagctttgtcaaggtattgat 17919226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 43586016 - 43585945
Alignment:
Q  95 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 166  Q
    |||| ||||||| |||||||||||||| || |   |||||| |||||||||| |||||||||||||||||||    
T  43586016 gtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagag 43585945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 785474 - 785384
Alignment:
Q  76 aatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 166  Q
    ||||||||||| || ||| |||| ||||||||||| |||  |||||||| |  ||||||| |||||||||| |||||| ||||||||||||    
T  785474 aatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 1334714 - 1334774
Alignment:
Q  100 ggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgca 160  Q
    ||||||||||||||| ||||||| | |  ||||||| |||||||||| |||||| ||||||    
T  1334714 ggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 7621228 - 7621169
Alignment:
Q  108 acacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagc 167  Q
    ||||||||| | ||||| || |||||||| ||||||||| |||||| |||||||||||||    
T  7621228 acacgatacttatcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagagc 7621169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 9031915 - 9031879
Alignment:
Q  129 aggacacgccttcaatcaaaagtgttcgtgcaacaga 165  Q
    |||||||||||||||||| |||||| |||||||||||    
T  9031915 aggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 37496744 - 37496834
Alignment:
Q  76 aatcacaagtgccgatgtggtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagag 166  Q
    ||||||||||| || ||| |||| | || || |||||| || ||||||| |   ||||||||||||||||| |||||| ||||||||||||    
T  37496744 aatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacagag 37496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 13307925 - 13307993
Alignment:
Q  95 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaaca 163  Q
    |||||||||||| |||||| ||||||| || |  | |||| ||||||||||| ||||||| ||||||||    
T  13307925 gtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 10497781 - 10497744
Alignment:
Q  130 ggacacgccttcaatcaaaagtgttcgtgcaacagagc 167  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  10497781 ggacacgccttcaatcagaggtgttcgtgcaacagagc 10497744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 25956493 - 25956565
Alignment:
Q  95 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaacagagcc 168  Q
    |||| ||||||| ||||||||| ||||||| |   ||||||||||||||||| |||||| ||||||| ||||||    
T  25956493 gtgtcggtgtcggacacgatacatgtcggacacg-ggacacgccttcaatcagaagtgtccgtgcaatagagcc 25956565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 16925683 - 16925747
Alignment:
Q  99 tggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgttcgtgcaaca 163  Q
    |||||||| ||||||||||||||||| |  || |||| |||||||| |||||||| | |||||||    
T  16925683 tggtgtcgcacacgatacgtgtcggacaccagaacactccttcaattaaaagtgtccatgcaaca 16925747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University