View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16207_high_3 (Length: 349)
Name: NF16207_high_3
Description: NF16207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16207_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 5467504 - 5467817
Alignment:
| Q |
19 |
ccacatttctttgtt--tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaa |
116 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5467504 |
ccacatttgtttgttagtggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaa |
5467603 |
T |
|
| Q |
117 |
ccaggtgattgaatgatagattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccataga |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5467604 |
ccaggtgactgaatgatagattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccataga |
5467703 |
T |
|
| Q |
217 |
ttcaagattcttcaaattccccactgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5467704 |
ttcaagattcttcaaattccccactgatgatggtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactca |
5467803 |
T |
|
| Q |
317 |
ttcggtattggccc |
330 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5467804 |
ttcggtattggccc |
5467817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 5379508 - 5379212
Alignment:
| Q |
34 |
tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgat |
133 |
Q |
| |
|
||||| ||| |||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||||| || |
|
|
| T |
5379508 |
tggaggtccgcataacccttcattccctttgaaggaatctgcatcaaatgattgaatttgagtgcccaaaggaattcgacccaccaggtgattgaacgag |
5379409 |
T |
|
| Q |
134 |
agattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaat |
233 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||| || ||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
5379408 |
aggttcatatattcaaggaaatatatacttgaaagctcttgagggatctcaccattcaaagaattgtttgacaaatccatacactcaagattcttcaaat |
5379309 |
T |
|
| Q |
234 |
tccccactgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattggccc |
330 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5379308 |
tccccactgatgatggtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattggccc |
5379212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 50 - 330
Target Start/End: Complemental strand, 5393798 - 5393518
Alignment:
| Q |
50 |
cctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgatagattcatatattcaa |
149 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| ||||| ||||||||||| || |||||||||||| | | |
|
|
| T |
5393798 |
ccttcattcccttcaaaggaatctacatcaaatgtttgaatttgagtacccaaaggaattcgtccaactaggtgattgaacgagagattcatatatgcta |
5393699 |
T |
|
| Q |
150 |
ggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaattccccactgatgatcg |
249 |
Q |
| |
|
||||| || |||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
5393698 |
ggaaagatagacttgaaagctcttgaggaatctctccattcaaggagttgtttgaaatgtccatagactcaagattcttcaaattccccactaatgatgg |
5393599 |
T |
|
| Q |
250 |
tatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattggccc |
330 |
Q |
| |
|
|||||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5393598 |
tatatgacccattaatgcattatgtgacaagtttagagcattcaatgccttgaattgcattaactcattcggtattggccc |
5393518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 5413263 - 5412967
Alignment:
| Q |
34 |
tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgat |
133 |
Q |
| |
|
||||| |||||| || |||| ||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||| ||||| ||||||||||| || |
|
|
| T |
5413263 |
tggaggtccacacaatccttcattccctgcaaaggaatctacatcaaatgtttgaatttgagtacccaaaggaattcgtccaactaggtgattgaacgag |
5413164 |
T |
|
| Q |
134 |
agattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaat |
233 |
Q |
| |
|
|||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
5413163 |
agattcatatatgctaggaaagatagacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagactcaagatgctttaaat |
5413064 |
T |
|
| Q |
234 |
tccccactgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattggccc |
330 |
Q |
| |
|
|| ||||||||||| ||||||| || |||||||||||||| ||||| ||||||||||||||||| |||||| |||| ||| ||| ||||||||||| |
|
|
| T |
5413063 |
tctccactgatgatggtatatgtcccgttaatgcattatgtgacaagtttagagcattcaatgctttgaatcgcatcaacacatcaggtattggccc |
5412967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 34 - 317
Target Start/End: Original strand, 5423218 - 5423501
Alignment:
| Q |
34 |
tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgat |
133 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
|
|
| T |
5423218 |
tggaggtccacataacccttcattccctttgaaggagtctacatcaaatgattgaatttgagtacccaaaggaattcgccccacgaggtgattgaacgag |
5423317 |
T |
|
| Q |
134 |
agattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaat |
233 |
Q |
| |
|
|| ||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||| |
|
|
| T |
5423318 |
aggttcatatatgctaggaaagatagacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatacactcaagatgctttaaat |
5423417 |
T |
|
| Q |
234 |
tccccactgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcat |
317 |
Q |
| |
|
|| ||||||||||| ||||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5423418 |
tctccactgatgatggtatatgtcccgttaatgcattatgtgacaagtttagagccatcaatgccttgaattgcattaactcat |
5423501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 5355163 - 5354867
Alignment:
| Q |
34 |
tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgat |
133 |
Q |
| |
|
||||| ||||||||||| || ||||||| ||||||||| ||||||||||||| |||||||| ||||| |||||||| || || ||||||||||| || |
|
|
| T |
5355163 |
tggaggtccacataacctttcgttccctttgaaggaatctgtatcaaatgattgtatttgagtacccaacggaattcgtcccacaaggtgattgaacgag |
5355064 |
T |
|
| Q |
134 |
agattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaat |
233 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5355063 |
aggttcatatattcaaggaaatatatacttgaaagctcttgaggaatctttccatttaaggagttgtttgacaagtccaaagattcaagattcttcaaat |
5354964 |
T |
|
| Q |
234 |
tccccactgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattggccc |
330 |
Q |
| |
|
||||||| |||||| ||||||||| | |||||||||||| ||||| ||||||||||||||||| || |||||| ||| ||||| ||||||||||| |
|
|
| T |
5354963 |
tccccaccgatgatggtatatggctcgataatgcattatgtgacaagtttagagcattcaatgctttcaattgcgttatctcataaggtattggccc |
5354867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 40 - 327
Target Start/End: Original strand, 5345907 - 5346194
Alignment:
| Q |
40 |
tccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgatagattc |
139 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||| |||||||||||||| || || ||||||||||| || || ||| |
|
|
| T |
5345907 |
tccacataacccttcatttcctttgaaggaatctacatcaaatgtttgaatttgagtacccaaaggaattcgacccactaggtgattgaacgagaggttc |
5346006 |
T |
|
| Q |
140 |
atatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaattcccca |
239 |
Q |
| |
|
|||||| | |||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||| |
|
|
| T |
5346007 |
atatatgctaggaaagatagacttgaaagctcttgagggatctctccattcaaggagttgtttgacaagtccatacactcaagattctttaaattctcca |
5346106 |
T |
|
| Q |
240 |
ctgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattgg |
327 |
Q |
| |
|
|||||| | |||||||||| | ||||||||||| ||||| || |||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
5346107 |
ctgatgctggtatatggcccctgaatgcattatgtgacaagttcagagcattcaatgccttgaattgcattagctcattaggtattgg |
5346194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 331
Target Start/End: Complemental strand, 5503022 - 5502732
Alignment:
| Q |
41 |
ccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgatagattca |
140 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||| |||||| | ||| |||||||| || || ||||||||||| || ||||| ||||| || ||||||| |
|
|
| T |
5503022 |
ccacacaacccttcatttccttcaaaagaatctgcatcaaaggtttggatttgagtgcctaatggaattcgccccactaggtggttgaacgagagattca |
5502923 |
T |
|
| Q |
141 |
tatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaattccccac |
240 |
Q |
| |
|
||| | | |||| || |||||||||| |||||||||||||||| || ||| | |||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
5502922 |
gataccccatgaaagataaacttgaaagctcttgaggaatctctcctttgaagaaattgtttgaaaagtccatagactcgagattcttcaaattccccac |
5502823 |
T |
|
| Q |
241 |
tgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattggccct |
331 |
Q |
| |
|
|||||| ||||| | || || ||||| ||||| || || || |||||||||| ||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
5502822 |
agatgatggtataggacccgtaaatgcgttatgtgataagttcagagcattcagtgccttgaattccattagctcatcaggtattggccct |
5502732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 5357277 - 5356981
Alignment:
| Q |
34 |
tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgat |
133 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||| |||||| |||||| | ||| | |||||| || || ||||||||||| || ||||||||||| || |
|
|
| T |
5357277 |
tggaggtccacataatccttcattcccttcaaaagaatctgcatcaaaggtttggacttgagtacctaatggaattcgccccactaggtgattgaacgag |
5357178 |
T |
|
| Q |
134 |
agattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaat |
233 |
Q |
| |
|
||||| | |||| | | || || ||| |||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
5357177 |
agatttagatatcccatataagataaactagaaagctcttgaggaatctctccattgaagaaattgtttgaaaagtctatagactcaagattcttcaaat |
5357078 |
T |
|
| Q |
234 |
tccccactgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcattcggtattggccc |
330 |
Q |
| |
|
| ||||| ||||| |||||| || | || |||||||| || || || |||||||||||| | | |||| ||||| ||||| ||||||||||| |
|
|
| T |
5357077 |
ttcccacagatgacgatatatgacccataaaagcattatgtgataagttcagagcattcaatacttccaattccattagctcatcaggtattggccc |
5356981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 5363538 - 5363457
Alignment:
| Q |
174 |
gaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaattccccactgatgatcgtatatg |
255 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
5363538 |
gaggaatctctccattcaaggagttatttgacaaatccatagactcaagattcttcaaagtccccacagatgatggtatatg |
5363457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 5363637 - 5363562
Alignment:
| Q |
34 |
tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaatt |
109 |
Q |
| |
|
||||| |||||||||||||| ||| |||| |||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
5363637 |
tggaggtccacataacccttcatttcctttgaaggaatctacatcaaattattgaatttgagtgcccaaaggaatt |
5363562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 34 - 317
Target Start/End: Complemental strand, 20329684 - 20329401
Alignment:
| Q |
34 |
tggagatccacataaccctttattcccttcaaaggaatctatatcaaatgattgaatttgagttcccaaaggaattcgcccaaccaggtgattgaatgat |
133 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||| || |
|
|
| T |
20329684 |
tggaggtccacataacccttcattccctttgaaggagtctacatcaaatgattgaatttgagtacccaaaggaattcgccccacgaggtgattgaacgag |
20329585 |
T |
|
| Q |
134 |
agattcatatattcaaggaaacttatacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagattcaagattcttcaaat |
233 |
Q |
| |
|
|| ||||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
20329584 |
aggttcatatatgctaggaaagatagacttgaaagcccttgaggaatctctccattcaaggagttgtttgacaagtccatagactcaagatgctttaaat |
20329485 |
T |
|
| Q |
234 |
tccccactgatgatcgtatatggcctgttaatgcattatgcgacaaatttagagcattcaatgccttgaattgcattaactcat |
317 |
Q |
| |
|
|| ||||||||||| ||||||| || |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20329484 |
tctccactgatgatggtatatgtcccgttaatgcattatgtgacaagtttagagccatcaatgccttgaattgcattaactcat |
20329401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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