View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16207_low_2 (Length: 408)
Name: NF16207_low_2
Description: NF16207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16207_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 30499461 - 30499065
Alignment:
| Q |
1 |
tacacgcgcggggtggggggaagtgggcatagtacgtacggaagatgagtcctgaagggaaactggcattgtctgtctgtcctaccatgaactaacgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30499461 |
tacacgcgcggggtggggggaagtgggcatagtacgtacggaagatgagtcctgaagggaaactggcattgtctgtctgtcctaccatgaactaacgaat |
30499362 |
T |
|
| Q |
101 |
gcaatgtaatgtaagatcaaatcatgatatcatcaaaaatgcaattctccaaaccttaccaattgaaatgaa-aaaagtttattatacacattgaaacca |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |
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| T |
30499361 |
gcaatgtaatgtaagatcaaatcatgatatcatcaaaaatgcaattctccaaaccttaccaattgaaatgaaaaaaagtttattatacgcattgaaatca |
30499262 |
T |
|
| Q |
200 |
aatcaaat------cacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacacctacatcacaatttattatatt |
293 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30499261 |
aatcaaatatcacacacattcacaattcaaccctctaaccaacttgcacatttcatttcatttcaacaaaagccacacctacatcacaatttattatatt |
30499162 |
T |
|
| Q |
294 |
cccttttcttcacttcatatattacattacaatttctttttcgnnnnnnncaacaactactctatggaagtaattgaagattttcttcgtagtttct |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30499161 |
cccttttcttcacttcatatattacattacaatttctttttcgaaaaaaacaacaactactctatggaagtaattggagattttcttcgtagtttct |
30499065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 74 - 390
Target Start/End: Original strand, 31214435 - 31214761
Alignment:
| Q |
74 |
tgtctgtcctaccatgaactaacgaatgcaatgtaatgtaagatcaaatcatgatatcatcaaaaatgcaattctccaaaccttaccaattgaaatgaaa |
173 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31214435 |
tgtctgtcctaccatgaactaacgaatgcaatg-----taagatcgaatcatgatatcatcaaaaatgcaattctccaaaccataccaattgaattgaaa |
31214529 |
T |
|
| Q |
174 |
aaagtttattatacacattgaaaccaaatcaaat-----------cacattcacaattcaaccctctaaccaa----cttgcacatttcatttcatttca |
258 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||| ||||| || |||||||||||||||||||||| |
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| T |
31214530 |
aaagtttaatatacgcattgaaaccaaatcaaatcaaatatcacacacattcacaaatcaaccccctaactaaacttgttgcacatttcatttcatttca |
31214629 |
T |
|
| Q |
259 |
acaaaagccacacctacatcacaatttattatattcccttttcttcacttcatatattacattacaatttctttttcgnnnnnnncaacaactactctat |
358 |
Q |
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| T |
31214630 |
acaaaagccacacctacatcacaatttattatattcccttttcttcacttcacatattacataacaatttctttttccaaaaaaacaacaacaactcgat |
31214729 |
T |
|
| Q |
359 |
ggaagtaattgaagattttcttcgtagtttct |
390 |
Q |
| |
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||||||||||| |||||||||||||||||||| |
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|
| T |
31214730 |
ggaagtaattggagattttcttcgtagtttct |
31214761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 31214908 - 31214873
Alignment:
| Q |
74 |
tgtctgtcctaccatgaactaacgaatgcaatgtaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
31214908 |
tgtctgtcctaccatgaactaacgaatgcaatgtaa |
31214873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 48671477 - 48671520
Alignment:
| Q |
345 |
aacaactactctatggaagtaattgaagattttcttcgtagttt |
388 |
Q |
| |
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|||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
48671477 |
aacaacaactcgatggaagtaattgaagactttcttcgtagttt |
48671520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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