View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16207_low_3 (Length: 352)
Name: NF16207_low_3
Description: NF16207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16207_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 336
Target Start/End: Original strand, 37270175 - 37270499
Alignment:
| Q |
12 |
catcacaatgcaagaatagatgtgtagatgtctccacacctctatcacacaaaacacaatttagagatgactccgggtctaaaatgtgacgaattgcaag |
111 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37270175 |
catcacaatgcaagaatagatgtgttgatgtctccacacctctatcacacaaaacacaatttagagacgactccgggtctaaaatgtgacgaattgcaag |
37270274 |
T |
|
| Q |
112 |
gttagctctcgtcggtatccgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaagtaatgagaaaactccctct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37270275 |
attagctctcgtcggtatccgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaagtaatgagaaaactccctct |
37270374 |
T |
|
| Q |
212 |
tcctgcgcaccaacttccccaacgagcataacagattccaacaccgcataggtagacttaaccnnnnnnntccctccttcatccggaagccacacccact |
311 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||| |
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| T |
37270375 |
tcctgcgcaccaacttcctcaacgagcataatagattccaacaccatataggtagacttaaccgaaaaaatccctccatcatccggaagccacgcccact |
37270474 |
T |
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| Q |
312 |
tatccacttcattccccaaagtaac |
336 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
37270475 |
tatccacttcattccccaaagtaac |
37270499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 42940992 - 42940668
Alignment:
| Q |
12 |
catcacaatgcaagaatagatgtgtagatgtctccacacctctatcacacaaaacacaatttagagatgactccgggtctaaaatgtgacgaattgcaag |
111 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42940992 |
catcacaatgcaagaatagatgtgtcgatgtctccacacctctatcacacaaaacacaatttagagacgactccgggtctaaaatgtgacgaattgcaag |
42940893 |
T |
|
| Q |
112 |
gttagctctcgtcggtatccgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaagtaatgagaaaactccctct |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42940892 |
gttagctctcgtcggtatccgatcaagaagtaaagtccatgagaatgccaccactttggatggagtcggactcctccaaagtaatgagaaaactccctct |
42940793 |
T |
|
| Q |
212 |
tcctgcgcaccaacttccccaacgagcataacagattccaacaccgcataggtagacttaaccnnnnnnntccctccttcatccggaagccacacccact |
311 |
Q |
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|| ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
42940792 |
tcttgcgcaccaacttcctcaacgagcataatagattccaacaccgtataggtagacttaaccgaaaaaatccctccatcatccggaagtcacacccact |
42940693 |
T |
|
| Q |
312 |
tatccacttcattccccaaagtaac |
336 |
Q |
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||||||||||||||||||||||||| |
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| T |
42940692 |
tatccacttcattccccaaagtaac |
42940668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 8273590 - 8273411
Alignment:
| Q |
12 |
catcacaatgcaagaatagatgtgtagatgtctccacacctctatcacacaaaacacaatttagagatgactccgggtctaaaatgtgacgaattgcaag |
111 |
Q |
| |
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||||| |||||||||| ||||| ||||||||||| ||| ||||||||||| |||||| || || || ||||| | |||||| || ||||| |||| |
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| T |
8273590 |
catcaaaatgcaagaaaagatgcgtagatgtctcaacatgcctatcacacaagacacaaaggagcgaagattccggatttaaaatatgtcgaatatcaag |
8273491 |
T |
|
| Q |
112 |
gttagctctcgtcggtatccgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaa |
191 |
Q |
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|| || || || || || |||||||| ||||||| ||| ||||||||||||||||||| |||||||| ||| |||||| |
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|
| T |
8273490 |
atttgcccttgtaggaatacgatcaaggagtaaagaccaaaagaatgccaccactttggacggagccgggctcttccaaa |
8273411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 36988662 - 36988590
Alignment:
| Q |
131 |
cgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaagtaatgagaaaa |
203 |
Q |
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|||||||| ||||| | ||| ||||| ||||||||||| ||||||||||||||| |||||| ||| ||||||| |
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| T |
36988662 |
cgatcaaggagtaaggaccacgagaacgccaccactttcgatggagccggactcttccaaattaaagagaaaa |
36988590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 2921387 - 2921447
Alignment:
| Q |
131 |
cgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaa |
191 |
Q |
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|||||||||||||||| ||| ||||| ||||| ||||| || |||||||||||| |||||| |
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| T |
2921387 |
cgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaa |
2921447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 40920815 - 40920771
Alignment:
| Q |
147 |
tccatgagaatgccaccactttggatggagccggactcctccaaa |
191 |
Q |
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|||| ||||||||||| ||||| || ||||||||||||||||||| |
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| T |
40920815 |
tccaagagaatgccacaacttttgaaggagccggactcctccaaa |
40920771 |
T |
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