View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16207_low_6 (Length: 260)
Name: NF16207_low_6
Description: NF16207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16207_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 45171031 - 45170794
Alignment:
| Q |
1 |
tattgcatgacattactattatacttcgctgcccttttttgcaattcatgatgaaacttaaggaaatacagtcatttctcttcnnnnnnngaaggaaata |
100 |
Q |
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| T |
45171031 |
tattgcatgacattactattatacttcgctgcccttttttgcaattcatgatgaaacttaaggaaatacagtcatttctcttcaaaaaaagaaggaaata |
45170932 |
T |
|
| Q |
101 |
cagtcataacttttttcttgttgttctcggtcaccaattgatatttttcacaggttcacattcaaagttattgttgagatggagacaggtaaagcatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45170931 |
cagtcataacttttttcttgttgttctcggtcaccaattgatgtttttcacaggttcacattcaaagttattgttgagatggagacaggtaaagcatcta |
45170832 |
T |
|
| Q |
201 |
aaaacatagagacaagtgaagtaaccaaaaccactgta |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45170831 |
aaaacatagagacaagtgaagtaaccaaaaccactgta |
45170794 |
T |
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