View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16207_low_7 (Length: 229)

Name: NF16207_low_7
Description: NF16207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16207_low_7
NF16207_low_7
[»] chr1 (9 HSPs)
chr1 (1-220)||(48584618-48584837)
chr1 (1-220)||(48618843-48619059)
chr1 (1-220)||(48652396-48652612)
chr1 (1-201)||(48660852-48661043)
chr1 (1-197)||(48655868-48656061)
chr1 (1-197)||(48628201-48628394)
chr1 (1-200)||(11546507-11546703)
chr1 (120-220)||(48666554-48666654)
chr1 (1-78)||(48666444-48666521)
[»] chr3 (1 HSPs)
chr3 (1-200)||(19666219-19666415)
[»] chr8 (2 HSPs)
chr8 (117-201)||(27227544-27227628)
chr8 (3-211)||(27223242-27223447)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48584618 - 48584837
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584618 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 48584717  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48584718 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaa 48584817  T
Q  201 gaaagagcttcgattgatga 220  Q
    ||||||||||| ||||||||    
T  48584818 gaaagagcttcaattgatga 48584837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 48619059 - 48618843
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    |||||| |||||||| |||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||||||| |||   |||||| ||  |  |||    
T  48619059 catttttcttcaactcctctgctttttcccctgttgtagcttccaataaacactttttcacctcatctcttgttactaat---ttattttcaatcatacc 48618963  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaa 200  Q
    |  ||||| | |||| ||||| ||||||||||| |||||||| ||||||||||| | ||| ||||| | || ||||||||||||||  |||||||| |||    
T  48618962 ataacccaatctaatccctacaccaaaaacatctaccaagaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcccaaa 48618863  T
Q  201 gaaagagcttcgattgatga 220  Q
    ||||| ||||| ||||||||    
T  48618862 gaaagtgcttccattgatga 48618843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 48652396 - 48652612
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    |||||| |||||||| |||||||||||| ||     |||||||||| || ||||||||||||||||||||||| ||||||||||| |   ||||   ||     
T  48652396 catttttcttcaactcctctgctttttccccagccattgcttccaacaagcacttcttcacctcatctcttgtcaccaatttatttt---cagcatgact 48652492  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaa 200  Q
    |  |||||   |||| ||||| ||||||||||| |||||||||||||||||||| | ||| ||||| | || ||||||||||||||  |||||||| |||    
T  48652493 ataacccaacctaatccctactccaaaaacatctaccaagaattttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcccaaa 48652592  T
Q  201 gaaagagcttcgattgatga 220  Q
    ||||| ||||| ||||||||    
T  48652593 gaaagtgcttccattgatga 48652612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 48660852 - 48661043
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    ||||||| |||||| ||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||| ||| ||||          |||    
T  48660852 cattttgtttcaacctctctgctttttcccctgttattgcttccaataagcacttcttcacctcatctcttgttaccagtttcttat---------cacc 48660942  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaa 200  Q
    |  ||||| | |||| ||  ||||||||||||| |||||||| ||||| |||||||||||||||||   ||  |||||||||||||  ||||||||||||    
T  48660943 ataacccaatctaatcccagccccaaaaacatcgaccaagaactttgcgtttgtaagttggtcaccaaatgcaggaaatgtcaacattggaactcctaaa 48661042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 48655868 - 48656061
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    |||||| |||||||| |||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||| ||||    | ||| |||| | ||     
T  48655868 catttttcttcaactcctctgctttttcccctgttgtagcttccaacaagcacttcttcacctcatctcttgttatcaat---ctgttttcagctccact 48655964  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcct 197  Q
    |  ||||| | |||| ||||| ||||||||||| |||||||| |||||||||||| ||||||||||   |  ||||||||| ||||| |||||||||    
T  48655965 ataacccaatctaatccctacaccaaaaacatctaccaagaactttgcatttgtaggttggtcaccaaatactggaaatgttaacactggaactcct 48656061  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 48628201 - 48628394
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    |||||| |||||||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| || || |  | |     ||     
T  48628201 catttttcttcaactcctctgctttttcccctgttgttgcttccaataagcacttcttcacctcatctcttgttaccaacttgttttccataag---act 48628297  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcct 197  Q
    |  ||||| | |||| ||||| ||||||||||| | ||| || |||||||||||||| ||||||||   || |||||||| |||||| |||||||||    
T  48628298 ataacccaatctaatccctacaccaaaaacatctatcaaaaactttgcatttgtaaggtggtcaccaaatgctggaaatgccaacactggaactcct 48628394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 11546507 - 11546703
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    |||||| |||||| | ||| |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||   |||||| ||  |  |||    
T  11546507 catttttcttcaaatcctcagctttttcccctattgttgcttctaataagcactttttcacctcatctcttgttacaaat---ttattttcaatcatacc 11546603  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaa 200  Q
    |  ||||| | |||| ||||| ||||||||||| ||||| || ||||||||||| | ||| ||||| | || ||||||||||||||  ||||| ||||||    
T  11546604 ataacccaatctaatccctacaccaaaaacatctaccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaacacctaaa 11546703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 48666554 - 48666654
Alignment:
Q  120 accccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaagaaagagcttcgattgatg 219  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||   || ||||||||||||||  ||||||||||||| ||| ||||| |||||||    
T  48666554 accccataaacatcaaccaagaactttgcgtttgtaagttggtcaccaaatgttggaaatgtcaacattggaactcctaaagtaagtgcttccattgatg 48666653  T
Q  220 a 220  Q
    |    
T  48666654 a 48666654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48666444 - 48666521
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttacca 78  Q
    |||||| ||||||| ||||||||||||| ||| ||||  |||||||||| || ||||| |  ||||||||| ||||||    
T  48666444 catttttcttcaacgtctctgctttttcccctgttgtaacttccaataagcatttctttaaatcatctcttcttacca 48666521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 19666415 - 19666219
Alignment:
Q  1 cattttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaacc 100  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||   ||||   ||     
T  19666415 cattttgcttcaactcctctcctttttctcctattgttgcttccaataagcacttcttcacttcatctcttgttaccaatttattat---cagcatgact 19666319  T
Q  101 actacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaa 200  Q
    |  ||||| | |||| || || ||||||||||||||||| || ||||||||||| | ||| ||||| | || ||||||||||||||  ||||||||||||    
T  19666318 ataacccaatctaataccaactccaaaaacatcaaccaaaaactttgcatttgtgacttgatcaccccatgctggaaatgtcaacattggaactcctaaa 19666219  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 27227544 - 27227628
Alignment:
Q  117 cctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaag 201  Q
    |||||| |||||||||| |||||||| ||||||||||||| ||| ||||| | || ||||||||| ||||  || ||||||||||    
T  27227544 cctacctcaaaaacatctaccaagaactttgcatttgtaacttgatcaccccatgctggaaatgttaacatcggcactcctaaag 27227628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 27223242 - 27223447
Alignment:
Q  3 ttttgcttcaacttctctgctttttcacctattgttgcttccaataaacacttcttcacctcatctcttgttaccaatttattatttacagcccaaccac 102  Q
    ||||||||||||| ||||||||||   |||    |||||||  |||| || |||||||||||||||||   ||||||||| || |   |||||  |||||    
T  27223242 ttttgcttcaactcctctgcttttggtcctgccattgcttctgataagcatttcttcacctcatctctacataccaatttgtttt---cagcctgaccac 27223338  T
Q  103 tacccattttaattcctaccccaaaaacatcaaccaagaattttgcatttgtaagttggtcacctcttgatggaaatgtcaacacaggaactcctaaaga 202  Q
     ||||| | | || ||||||||||||||||| ||||| || ||||||||||| | ||| || || | || ||||||||| ||||  || ||||||||||     
T  27223339 aacccaatctgatccctaccccaaaaacatctaccaaaaactttgcatttgtgacttgatcgccccatgctggaaatgttaacatcggcactcctaaagt 27223438  T
Q  203 aagagcttc 211  Q
    ||| |||||    
T  27223439 aagtgcttc 27223447  T

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