View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16208_high_1 (Length: 507)
Name: NF16208_high_1
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16208_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 39511294 - 39511785
Alignment:
| Q |
1 |
ggagctacagctcctgactattcaaaagcgcagaagcttgaggatgggctcatagttcccctggcaaagcccaaaaagaattcaggcataaaggtatgca |
100 |
Q |
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| T |
39511294 |
ggagctacagctcccgattattcaaaagcgcagaagcttgaggatgggctcatagttcccctagcaaagcccaaaaagaattcaggcataaaggtatgca |
39511393 |
T |
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| Q |
101 |
gtataagnnnnnnnccaacnnnnnnn-ctcaggcagaagnnnnnnngatgattaccataatttaatacatcatatcataactattctctatcactttgcg |
199 |
Q |
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| T |
39511394 |
gtataagtttttttccaacaaaaaaaactcaggcagaagtttttttgatgattaccataatttaatacatcatatcataactattctctatcactttgcg |
39511493 |
T |
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| Q |
200 |
ttgcagggcgatctaatgtacaatgaatacattgtttataatgtggagcagattaggatgcgttatgttgttaacgttaaattcaattttgggtctagaa |
299 |
Q |
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| T |
39511494 |
ttgcagggcgatctaatgtacaatgaatacattgtttataatgtggagcagattaggatgcgttatgttgttaacgttaaattcaattttgggtctagaa |
39511593 |
T |
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| Q |
300 |
gatagcagccagacgtgattaaaatatatgcgtcttttattagtatctaatttgccaagccaaaaccgatgatgatctgtgtaaattactttttactaag |
399 |
Q |
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| T |
39511594 |
gatagcagccagacgtgattaaaatatatgcgtcttttattagtatctagtttgccaagccaaaaccgatgatgatccgtgtaaattac-ttttactaag |
39511692 |
T |
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| Q |
400 |
aaattgaaatggtttgcagtttgcactttgaccaagaaaaatgaagcacacgttagaaatggatcaggaataattaacagaggtgataaatgt |
492 |
Q |
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| T |
39511693 |
aaattgaaatggtttgcagtttgcactttgaccaagaaaaatgaagcacacgttagaaatggatcaggaataattaacagaggtgataaatgt |
39511785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 146 - 328
Target Start/End: Original strand, 39518218 - 39518404
Alignment:
| Q |
146 |
gatgattaccataatttaatacatcatatcataactattctctatcactttgcgttgcag------ggcgatctaat-gtacaatgaatacattgtttat |
238 |
Q |
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|||| ||||||| ||||||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||||| | ||||||| |||||||||||| |
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| T |
39518218 |
gatgcttaccatgatttaatacat---atcataattattctctatcactttgtgttgcagttgcagggcaatctaattgcacaatgagtacattgtttat |
39518314 |
T |
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| Q |
239 |
aatgtggagcagattaggatgcgttatgttgttaacgttaaattcaattttgggtctagaagatagcagccagacgtgattaaaatatat |
328 |
Q |
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| T |
39518315 |
aatgtggagcagattaggatgcgttatgttgtgaatgttaaattcaattatgggacttgaagttagcatgcagacctgtttaaaatatat |
39518404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39518059 - 39518158
Alignment:
| Q |
1 |
ggagctacagctcctgactattcaaaagcgcagaagcttgaggatgggctcatagttcccctggcaaagcccaaaaagaattcaggcataaaggtatgca |
100 |
Q |
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||||||||||||||||| | ||||||||| ||| |||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||| |
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| T |
39518059 |
ggagctacagctcctgatttttcaaaagctcaggagcttgaggatgggctcatagttcccctaggaaagcccaaaacaaattcacgcataaaggtatgca |
39518158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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