View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16208_high_2 (Length: 480)
Name: NF16208_high_2
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16208_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 38118742 - 38119186
Alignment:
| Q |
18 |
aattcaaccaaacacctccacctgatggctatgattttaataattatgatattttcagcgtggctaacaacacaaatgctacttctagcaatggaattta |
117 |
Q |
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| T |
38118742 |
aattcaaccaaacacctccacctgatggctatgattttaataattatgatattttcagtgtggctaacaacacaaatgctacttctagcaatggaattta |
38118841 |
T |
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| Q |
118 |
tagactgaagttcaatacaactgtggatattatacttcaaaatgcaaacactatgaataaaaataatagtgagacacatccttggcatcttcatggacat |
217 |
Q |
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| T |
38118842 |
tagactgaagttcaatacaactgtggatattatacttcaaaatgcaaacactatgaataaaaataacagtgagacacatccttggcatcttcatggacat |
38118941 |
T |
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| Q |
218 |
gatttttgggtacttggatatggaaagggaaagtttgatgcgaacaaagacccaaaaaattataatttggtgaaccccattatgaagaatactgtgccag |
317 |
Q |
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| T |
38118942 |
gatttttgggtacttggatatggaaagggaaagtttgatgcgaacaaagacccaaaaaattataatttggtgaaccccattatgaagaatactgtgccag |
38119041 |
T |
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| Q |
318 |
tgcactcatttggttggactgctttgaggtttcgatcagataatcctggtgtgtgggctttccattgtcatatagagtctcatttctatatgggaatggg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38119042 |
tgcactcatttggttggactgctttgaggtttcgatcagataatcctggtgtctgggctttccattgtcatatagagtctcatttctatatgggaatggg |
38119141 |
T |
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| Q |
418 |
agtggtttttgaagaaggaattgaaagggttggtaagctaccttc |
462 |
Q |
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| T |
38119142 |
agtggtttttgaagaaggaattgaaagggttgggaagctaccttc |
38119186 |
T |
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