View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16208_high_7 (Length: 274)
Name: NF16208_high_7
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16208_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 7416617 - 7416787
Alignment:
| Q |
20 |
acatccattgttcatggattgtctattatggtgcctcattttattgtttgttcagagaagtagttggtgtaaatgctacttctaattcaccatttatacg |
119 |
Q |
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| T |
7416617 |
acatccattgttcatggattgtctattatggtgcctcattttattgtttgttcagagaagtagttggtgtaaatgctacttctaattcaccatttatacg |
7416716 |
T |
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| Q |
120 |
caataatgtaattatactattactatgcagatttttgattgaaggaaaaagatgcgatgcaatgcaatgca |
190 |
Q |
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| T |
7416717 |
caataatgtaattatactattactatgcagatttttgattgaaggaaaaagatgcaatgcaatgcaatgca |
7416787 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 7416821 - 7416849
Alignment:
| Q |
235 |
caccagctatagttatagctctctgctcc |
263 |
Q |
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| T |
7416821 |
caccagctatagttatagctctctgctcc |
7416849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 52765575 - 52765639
Alignment:
| Q |
57 |
attttattgtttgttcagagaagtagttggtgtaaatgctacttctaattcaccatttatacgca |
121 |
Q |
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| T |
52765575 |
attttattggtttttcagagaagtagttggtgtaaatgctagttgcaattctccatttatgcgca |
52765639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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