View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16208_low_10 (Length: 251)
Name: NF16208_low_10
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16208_low_10 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 41533032 - 41532811
Alignment:
| Q |
14 |
gagcagagaagggtatatgatagaatcatgtcaagggtatttgtaaacaaacccgacatattttttctttatggttatggaggcacagggaagactttta |
113 |
Q |
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| T |
41533032 |
gagcagagaagggtatatgatagaatcatgtcaagggtatttgaaaacaaacccgacatattttttctttatggttatggaggcacagggaagactttta |
41532933 |
T |
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| Q |
114 |
tttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgcttcaagtgggatagctgcactactcattccaggaggaagaac |
213 |
Q |
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| T |
41532932 |
tttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgcttcaagtgggatagctgcactactcattccaggaggaagaac |
41532833 |
T |
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| Q |
214 |
tgcacactcaaggtttgctatt |
235 |
Q |
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| T |
41532832 |
tgcacactcaaggtttgctatt |
41532811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 23090656 - 23090589
Alignment:
| Q |
74 |
ttttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgag |
141 |
Q |
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| T |
23090656 |
ttttttctgtacggttatggtggtacggggaagacatttatttggagggctttgtcagctgctttgag |
23090589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 34418321 - 34418167
Alignment:
| Q |
71 |
atattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttg |
170 |
Q |
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| T |
34418321 |
atattttttctttatggttacggtggcacagggaaaacatttttatggagggctatggcagctgcattgagatcacaaggtgagattgttttaatagttg |
34418222 |
T |
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| Q |
171 |
cttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaag |
225 |
Q |
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| T |
34418221 |
catccagtggcatagctgcgttactcatacctggaggcagaaccgcacattcaag |
34418167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 44583367 - 44583524
Alignment:
| Q |
72 |
tattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgc |
171 |
Q |
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| T |
44583367 |
tattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgc |
44583466 |
T |
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| Q |
172 |
ttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaaggttt |
229 |
Q |
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| T |
44583467 |
atccagtggaatagctgctttgttgattcctggaggaagaactgcacattcaaggttt |
44583524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 5747 - 5659
Alignment:
| Q |
98 |
acagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgcttcaagtgggatagc |
186 |
Q |
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| T |
5747 |
acaggaaaaacttttatttggagagctatgtcatctgcattgagatccaaaggacaaattgttctaacagtagcgtcaagtggtatagc |
5659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 7781078 - 7781196
Alignment:
| Q |
72 |
tattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtcaaattgtcttaactgttgc |
171 |
Q |
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| T |
7781078 |
tattttttctatatggatacggcggaacaggcaagacgtttctttggagagcaatgtcggctgcgatacgatcaagaggtgaaatagttttaacagttgc |
7781177 |
T |
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| Q |
172 |
ttcaagtgggatagctgca |
190 |
Q |
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| T |
7781178 |
ttcaagtggtatagctgca |
7781196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 33445197 - 33445242
Alignment:
| Q |
74 |
ttttttctttatggttatggaggcacagggaagacttttatttgga |
119 |
Q |
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| T |
33445197 |
ttttttgtttatggttatggaggaacagggaagacttatctttgga |
33445242 |
T |
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