View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16208_low_13 (Length: 218)

Name: NF16208_low_13
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16208_low_13
NF16208_low_13
[»] chr3 (12 HSPs)
chr3 (19-189)||(23448317-23448487)
chr3 (19-188)||(23455082-23455251)
chr3 (19-192)||(23352964-23353137)
chr3 (34-192)||(23387314-23387472)
chr3 (19-198)||(23500085-23500264)
chr3 (19-192)||(23479606-23479779)
chr3 (34-192)||(23473485-23473643)
chr3 (38-192)||(23440957-23441111)
chr3 (19-189)||(23405673-23405843)
chr3 (19-189)||(23464304-23464474)
chr3 (98-173)||(36024730-36024805)
chr3 (79-181)||(36003614-36003716)
[»] scaffold0570 (1 HSPs)
scaffold0570 (19-198)||(10610-10789)
[»] scaffold0201 (1 HSPs)
scaffold0201 (19-192)||(12468-12641)
[»] chr2 (2 HSPs)
chr2 (84-161)||(16122834-16122911)
chr2 (106-161)||(16336289-16336344)
[»] chr4 (1 HSPs)
chr4 (94-170)||(12895802-12895878)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 23448317 - 23448487
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  23448317 atacttgtttgattcatccattacattgaggacgcaacgaccttcgaattgggaaaaatgtttagcatataatgtcttagcaagggtggtctttcctatc 23448416  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttc 189  Q
    ||||||||||||||||||||||| ||||| || |||||||||| ||||||||| |||||||||||||||||    
T  23448417 ccacccatgccccatattccaagtactctgacttcatttgacccaattttcagcattgattcaatttgttc 23448487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 23455082 - 23455251
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| || ||||||||||| |||||||||||     
T  23455082 atacttgtttgattcatccattacattgaggaagcaacgaccttcgaattgggaataaagtttagcatataaagtcttagcaagggttgtctttcctatg 23455181  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgtt 188  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  23455182 ccacccatgccccatattccaaggactttaacatcatttgacccaattttcagcattgattcaatttgtt 23455251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 23352964 - 23353137
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||  ||||||||||||||||||||||     
T  23352964 atacttgtttgattcatccattacattgaggaagcaacgaccttcgaattgggaataaagtttagcatataaagtcctagcaagggtggtctttcctatg 23353063  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcata 192  Q
    ||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||||||||||| |||||    
T  23353064 ccacccatgccccatattccaaggattccaacatcatttgactcaattttcagtattgattcaatttggtcata 23353137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 23387314 - 23387472
Alignment:
Q  34 atccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatcccacccatgccccat 133  Q
    |||||||||||||||||||||||||||||| |||||| || |||||||| ||||||| || ||||||||||||||||||||||| |||||||||||||||    
T  23387314 atccattacattgaggaagcaacgaccttcaaattgggaataaagtttaccatataaagtcttagcaagggtggtctttcctatgccacccatgccccat 23387413  T
Q  134 attccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcata 192  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| ||||| || |||||    
T  23387414 attccaaggactctgacatcatttgaccaaattttcagcattgaatcaatctgctcata 23387472  T

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Target: chr3; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 23500085 - 23500264
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||||||| ||||||| ||||||||||||  || | | |||||||||||| |   ||||||||||||||||||||||     
T  23500085 atacttgtttgattcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcctatg 23500184  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcatatttctt 198  Q
    ||||||||||||||||||||||||||||| || |||| ||||| ||||||||| |||||||||||||||| ||| |||||    
T  23500185 ccacccatgccccatattccaaggactctgacttcatgtgacccaattttcagcattgattcaatttgtttataattctt 23500264  T

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Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 23479606 - 23479779
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||||||| ||||||| ||||||||||||  || | | |||||||||||| |   ||||||||||||||||||||||     
T  23479606 atacttgtttgattcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcctatg 23479705  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcata 192  Q
    ||||||||||||||||||||||||||||| || |||| ||||| |||||||||  ||||||||||||| |||||    
T  23479706 ccacccatgccccatattccaaggactctgacttcatgtgacccaattttcagctttgattcaatttggtcata 23479779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 23473485 - 23473643
Alignment:
Q  34 atccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatcccacccatgccccat 133  Q
    ||||||||||||||| ||||||| |||||| |||||  || ||| | |||||||| | |   ||||||| |||||||||||||| |||||||||||||||    
T  23473485 atccattacattgagaaagcaacaaccttcaaattgagaataaattatagcatatgaagccctagcaagagtggtctttcctatgccacccatgccccat 23473584  T
Q  134 attccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcata 192  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||    
T  23473585 attccaaggactctaacatcatttgagccaattttcagtattgactcaatttggtcata 23473643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 38 - 192
Target Start/End: Original strand, 23440957 - 23441111
Alignment:
Q  38 attacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatcccacccatgccccatattc 137  Q
    ||||||||||| ||||||| |||||| |||||  || ||| | |||||||| | |   ||||||| |||||||||||||| |||||||||||||||||||    
T  23440957 attacattgagaaagcaacaaccttcaaattgagaataaattatagcatatgaagccctagcaagagtggtctttcctatgccacccatgccccatattc 23441056  T
Q  138 caaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcata 192  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||| |||||    
T  23441057 caaggactctaacatcatttgagccaattttcagtattgactcaatttggtcata 23441111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 23405673 - 23405843
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||| | |||||||| || |||| |||||| || |||||||| || |||| ||  |||||| |||||||||||||||     
T  23405673 atacttgtttgattcatccattacatagtggaagcaaagaacttcaaattgggaataaagtttaccaaataaagtcctagcaatggtggtctttcctatg 23405772  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttc 189  Q
    |||||||||||||||||||||| || | ||||||||||||||| ||||| ||  |||||||||||||||||    
T  23405773 ccacccatgccccatattccaatgattttaacatcatttgacccaatttccatcattgattcaatttgttc 23405843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 23464304 - 23464474
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||| | |||||||| || |||| |||||| || |||||||| || |||| ||  |||||| |||||||||||||||     
T  23464304 atacttgtttgattcatccattacatagtggaagcaaagaacttcaaattgggaataaagtttaccaaataaagtcctagcaatggtggtctttcctatg 23464403  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttc 189  Q
    |||||||||||||||||||||| || | ||||||||||||||| ||||| ||  |||||||||||||||||    
T  23464404 ccacccatgccccatattccaatgattataacatcatttgacccaatttccatcattgattcaatttgttc 23464474  T

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Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 36024730 - 36024805
Alignment:
Q  98 gcaagggtggtctttcctatcccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagta 173  Q
    ||||| |||||||||||||| || ||||||||||||| ||| ||| |||||||||||||||||| |||||||||||    
T  36024730 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagta 36024805  T

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Target: chr3; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 36003614 - 36003716
Alignment:
Q  79 tttagcatataatgttttagcaagggtggtctttcctatcccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgat 178  Q
    ||||||||||||   |||||| || |||||||||||||| || ||||| ||||||| ||||||   |||||||||||||||| |||||||||||| ||||    
T  36003614 tttagcatataaatctttagctagagtggtctttcctataccgcccattccccataatccaagtgatctaacatcatttgacaaaattttcagtaatgat 36003713  T
Q  179 tca 181  Q
    |||    
T  36003714 tca 36003716  T

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Target: scaffold0570 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 10789 - 10610
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  ||||||||||||||| ||||||| ||||||||||||  || | | |||||||||||| |   ||||||||||||||||||||||     
T  10789 atacttgtttgattcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcctatg 10690  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcatatttctt 198  Q
    ||||||||||||||||||||||||||||| || |||| ||||| ||||||||| |||||||||||||||| ||| |||||    
T  10689 ccacccatgccccatattccaaggactctgacttcatgtgacccaattttcagcattgattcaatttgtttataattctt 10610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 12468 - 12641
Alignment:
Q  19 atacttgtttaatgaatccattacattgaggaagcaacgaccttcgaattggcaaaaaagtttagcatataatgttttagcaagggtggtctttcctatc 118  Q
    |||||||||| ||  |||| ||||||| ||||| ||||  ||||| |||||| || ||||||| |||||||| ||  | ||||||||||| |||| |||     
T  12468 atacttgtttgattcatcccttacattaaggaaacaaccgccttcaaattgggaataaagttttgcatataaagtactcgcaagggtggtttttcgtatg 12567  T
Q  119 ccacccatgccccatattccaaggactctaacatcatttgaccaaattttcagtattgattcaatttgttcata 192  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |   ||||||||||||| |||||    
T  12568 ccacccatgccccatattccaaggactctaacatcatttgacccaattttaaactttgattcaatttggtcata 12641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 16122834 - 16122911
Alignment:
Q  84 catataatgttttagcaagggtggtctttcctatcccacccatgccccatattccaaggactctaacatcatttgacc 161  Q
    |||||||| |||| || || | |||||||||||| || ||||||||||||| ||||||   |||||||||||||||||    
T  16122834 catataatttttttgctagagcggtctttcctatgccccccatgccccataatccaagcgttctaacatcatttgacc 16122911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 16336344 - 16336289
Alignment:
Q  106 ggtctttcctatcccacccatgccccatattccaaggactctaacatcatttgacc 161  Q
    |||||||||||| || ||||||||||||| ||||||   |||||||||||||||||    
T  16336344 ggtctttcctatgccccccatgccccataatccaagcgttctaacatcatttgacc 16336289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 12895878 - 12895802
Alignment:
Q  94 tttagcaagggtggtctttcctatcccacccatgccccatattccaaggactctaacatcatttgaccaaattttca 170  Q
    |||||| || |||||||||||||| || ||||||||||| |  ||||||  | ||||||||||||||| ||||||||    
T  12895878 tttagctagagtggtctttcctatgccgcccatgccccaaaacccaagggttttaacatcatttgacccaattttca 12895802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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