View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16208_low_3 (Length: 435)
Name: NF16208_low_3
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16208_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 419
Target Start/End: Complemental strand, 26679692 - 26679304
Alignment:
| Q |
12 |
tcatcaatccccaatgtttccggttttcatgttcatttatgatgcaaatagtttctgtgattggatacagactggcagtgattttctgcatgtctatttc |
111 |
Q |
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| T |
26679692 |
tcatcgatccccaatgtttccggttttcatgttcatttatgaagcaaatagtttctgtgattggatacagactggcagtggttttctgcatgtctatttc |
26679593 |
T |
|
| Q |
112 |
tctcaatttgctgctgcatcaacaaccctgtcaatttagtccgagtgccaacttcaaaaaggctggacatggaaccatcctcacagaattagagcttttc |
211 |
Q |
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| T |
26679592 |
tctcaatttgctgctgcatcaacaaccctgtcaatttagtccgagtgccaacttcaaaa------------------tcctcacagaattagagcttttc |
26679511 |
T |
|
| Q |
212 |
tttggaatcaaaatcttattctacttactcagaaatgtagaaaggttggtcgaaggtatgaccactgataatctttgttcacgatgcaatacttgcccaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26679510 |
tttggaatcaaaatcttattctacttactcagaaatgtagaaaggttggtcga-ggtatgacctctgataatctttgttcacgatgcaatacttgcccaa |
26679412 |
T |
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| Q |
312 |
atctattatgcacttattgaaagattgtgagcacatagaatttcagtctaaccttaatgatcctaaggtttatagcaattttttagtattggtatggatg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26679411 |
atctattatgcacttattgaaagattgtgagcacatagaatttcagtctaaccttaatgatcctaaggtttatagcaattttttagtattggtatggatg |
26679312 |
T |
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