View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16208_low_5 (Length: 412)

Name: NF16208_low_5
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16208_low_5
NF16208_low_5
[»] chr5 (2 HSPs)
chr5 (117-390)||(498604-498877)
chr5 (48-76)||(496633-496661)
[»] chr7 (5 HSPs)
chr7 (122-312)||(25477312-25477502)
chr7 (127-259)||(25639060-25639192)
chr7 (123-259)||(25434810-25434946)
chr7 (123-249)||(25485950-25486076)
chr7 (183-249)||(25447014-25447080)
[»] chr2 (6 HSPs)
chr2 (160-259)||(35182332-35182431)
chr2 (160-259)||(35104376-35104475)
chr2 (160-259)||(35044537-35044636)
chr2 (160-259)||(35053505-35053604)
chr2 (160-259)||(35151734-35151833)
chr2 (160-259)||(35176373-35176472)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 117 - 390
Target Start/End: Original strand, 498604 - 498877
Alignment:
Q  117 tcattgtttctaattgttatgagcgatttttcagcattaagtggaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccg 216  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  498604 tcattgtttctaattgttatgagtgatttttcagcaataagtggaattccaatatcagggtgcaatccacaagcatctagaattccccttacataatccg 498703  T
Q  217 ccttctcccctttaaagaaacaagcaatatgcagaaatatttcactctctcttggctccagtccctcaaaacttatccgaagcactttcataattctttt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  498704 ccttctcccctttaaagaaacaagcaatatgcagaaatatttctctctctcttggctctagtccctcaaaacttatccgaagcactgtcataattctttt 498803  T
Q  317 gtccaatgatgggttattatgcaatccatccaaggtagctctccactgtgtggcatttcgggtacataagaaag 390  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  498804 gtccagtgatgggttattccgcaatccatccaaggtagctctccactgtgtggcatttcgggtacataagaaag 498877  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 496633 - 496661
Alignment:
Q  48 taagagatgtcatattatcaaagatgtta 76  Q
    |||||||||||||||||||||||||||||    
T  496633 taagagatgtcatattatcaaagatgtta 496661  T

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Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 122 - 312
Target Start/End: Original strand, 25477312 - 25477502
Alignment:
Q  122 gtttctaattgttatgagcgatttttcagcattaagtggaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttc 221  Q
    ||||||||| ||||| || ||||||||| ||  ||||||||||||||||| ||| |||||||||||||||| ||||| || ||||||||||||  || ||    
T  25477312 gtttctaatagttattagtgatttttcaacaagaagtggaattccaatattaggctgcaatccacaagcatgtagaattctccttacataatcttccctc 25477411  T
Q  222 tcccctttaaagaaacaagcaatatgcagaaatatttcactctctcttggctccagtccctcaaaacttatccgaagcactttcataattc 312  Q
    ||||| | |||||| |||||||  |||| |||||||||  |||||||| |||| |||||||||||||||  ||||||||||||||||||||    
T  25477412 tccccgtcaaagaagcaagcaacgtgcaaaaatatttctttctctcttagctctagtccctcaaaacttgaccgaagcactttcataattc 25477502  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 25639192 - 25639060
Alignment:
Q  127 taattgttatgagcgatttttcagcattaagtggaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttctcccc 226  Q
    |||| |||||||  ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||||   | |||| ||    
T  25639192 taatggttatgactgatttttcagcaagaagtggaattccaatatcaggatgcaatccacaagcatctagaattcggcttacataatctttcctctctcc 25639093  T
Q  227 tttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||||| |||||||||| |||||||||||||||    
T  25639092 tttaaaaaaacaagcaacatgcagaaatatttc 25639060  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 25434810 - 25434946
Alignment:
Q  123 tttctaattgttatgagcgatttttcagcattaagtggaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttct 222  Q
    |||||||| ||||| |||||||| ||| ||  |||||||||  |||||||||| | ||  |||||| ||| ||||| ||  ||||||||||||  | |||    
T  25434810 tttctaatagttattagcgatttctcaacaagaagtggaatatcaatatcaggattcagcccacaaacatttagaattctgcttacataatccttcctct 25434909  T
Q  223 cccctttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||| |||||||||||||||| ||||| |||||||||    
T  25434910 ccccattaaagaaacaagcaacatgcaaaaatatttc 25434946  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 25486076 - 25485950
Alignment:
Q  123 tttctaattgttatgagcgatttttcagcattaagtggaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttct 222  Q
    |||||||| ||||| |||||||||||||||  |||| ||||   |||| |||| | |||  ||||||||||||||| ||  ||||||||||||  | |||    
T  25486076 tttctaatggttattagcgatttttcagcaagaagtcgaatattaataccaggattcaactcacaagcatctagaattcggcttacataatccttcctct 25485977  T
Q  223 cccctttaaagaaacaagcaatatgca 249  Q
    | || |||||||||||||||| |||||    
T  25485976 ctccattaaagaaacaagcaacatgca 25485950  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 25447080 - 25447014
Alignment:
Q  183 ccacaagcatctagaactccccttacataatccgccttctcccctttaaagaaacaagcaatatgca 249  Q
    |||||||||||||||| ||  ||||||||||||  | |||| || |||||||||||||||| |||||    
T  25447080 ccacaagcatctagaattcggcttacataatccctcctctctccattaaagaaacaagcaacatgca 25447014  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 35182332 - 35182431
Alignment:
Q  160 gaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttctcccctttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||||||||||| ||||||||| |||||||||||||||| || | | ||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  35182332 gaattccaatatgagggtgcaacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttc 35182431  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 35104376 - 35104475
Alignment:
Q  160 gaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttctcccctttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||||||||| | |||||||||||||||||||||||||| || | |||||||| |  || ||||||||||||||||||||||||| |||| |||||||||    
T  35104376 gaattccaatgtgagggtgcaatccacaagcatctagaattctctttacataaacttccctctcccctttaaagaaacaagcaatgtgcataaatatttc 35104475  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 35044537 - 35044636
Alignment:
Q  160 gaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttctcccctttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||||||||| | |||||  ||||||||||||||||||| || | ||||||||||  || |||||||||||||||| |||||||| ||||||||||||||    
T  35044537 gaattccaatttgagggtataatccacaagcatctagaattcgctttacataatcttccctctcccctttaaagaagcaagcaatgtgcagaaatatttc 35044636  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 35053505 - 35053604
Alignment:
Q  160 gaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttctcccctttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||||||||  | ||||||||| |||||||||||||||| || | | ||||| ||  | ||||||||||||||||||||||||||||||| |||||||||    
T  35053505 gaattccaaggtgagggtgcaacccacaagcatctagaattcgcttcacatattcttctttctcccctttaaagaaacaagcaatatgcaaaaatatttc 35053604  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 35151833 - 35151734
Alignment:
Q  160 gaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttctcccctttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||||||||| | |||||| ||||||||||||||||||| || | | ||| ||||  || ||||| ||||||||||||||||||| ||||||||||||||    
T  35151833 gaattccaatgtgagggtgtaatccacaagcatctagaattctcttcacacaatcttccctctccactttaaagaaacaagcaatgtgcagaaatatttc 35151734  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 35176373 - 35176472
Alignment:
Q  160 gaattccaatatcagggtgcaatccacaagcatctagaactccccttacataatccgccttctcccctttaaagaaacaagcaatatgcagaaatatttc 259  Q
    |||| ||||| | ||| ||||| ||||||||||| |||| || | | ||||||||  | |||   |||||||||||||| ||||||||||||||||||||    
T  35176373 gaatgccaatgtgaggatgcaacccacaagcatcgagaattcgcttcacataatcttctttcattcctttaaagaaacaggcaatatgcagaaatatttc 35176472  T

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