View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16208_low_6 (Length: 288)
Name: NF16208_low_6
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16208_low_6 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 41570263 - 41569993
Alignment:
| Q |
1 |
attgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaacaa-taaaacaggaaagaaaga |
99 |
Q |
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| T |
41570263 |
attgttaattgattgatccaccatgttaaggacatggttcaagctcctagtagaagaaaacggatcgaacacatctaaaaaataaaacaggaaagaaaaa |
41570164 |
T |
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| Q |
100 |
taaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttacaagtgataacaagtacc |
199 |
Q |
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| T |
41570163 |
taaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttacaagtgataacaagtacc |
41570064 |
T |
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| Q |
200 |
agaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgtactggcgcatgg |
270 |
Q |
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| T |
41570063 |
agaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgtactggcgcatgg |
41569993 |
T |
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Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 9127 - 9193
Alignment:
| Q |
12 |
attgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaa |
78 |
Q |
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|||||||||||||||||| || ||| |||| |||||||| | |||||||||||| ||||||||||| |
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| T |
9127 |
attgatccaccatgttaagcacctggctcaaactcctagttggagaaaacggatcaaacacatctaa |
9193 |
T |
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