View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16208_low_7 (Length: 281)
Name: NF16208_low_7
Description: NF16208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16208_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 39279350 - 39279108
Alignment:
| Q |
1 |
caaattttcccattctgtgttatcannnnnnnccaagtgttgttgttgtgcatagttgaaaagattggatttttatgcaaactagaagagttctactgaa |
100 |
Q |
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| T |
39279350 |
caaattttcccattctgtgtcatcatttttt-ccaagtggtgttgttgtgcatagtggaaaagattggatttttatgcaaactagaagagttctgctgaa |
39279252 |
T |
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| Q |
101 |
cccaattgaagatttgaaagttttcaacatgaatgtgagagttttgagttaggaaactaaccctaattgagaaaatatgaattgggtcgtgatgataatt |
200 |
Q |
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| T |
39279251 |
cccaaatgaagatttgaaagttttcaacatgaatgtgagatttatgagttatgaaactaaccctaattgagaaaatatgaattgggtcgtgatgataatt |
39279152 |
T |
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| Q |
201 |
gacagattatgagtgtggaaatctaaaattgaagcttaaaacca |
244 |
Q |
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| T |
39279151 |
gacagattatgagtgtggaaatcaaaaattgaagcttaaaacca |
39279108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 17351010 - 17351172
Alignment:
| Q |
34 |
caagtgttgttgttgtgcatagttgaaaagattggatttttatgcaaactagaagagttctactgaacccaattgaagatttgaaagttttcaacatgaa |
133 |
Q |
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| T |
17351010 |
caagtgatgttgttgtgcattgtgaaaaagattggatttttatgcaaagtagaatagttctacttagcccaattgaagatttgaatgttttcaacatgaa |
17351109 |
T |
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| Q |
134 |
tgtgagagttttgagttaggaaactaaccctaattgagaaaatatgaattgggtcgtgatgat |
196 |
Q |
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| T |
17351110 |
ggtgagatttttgagttaggaaagtatccctaattgagaaaatatgaattgggtggtgatgat |
17351172 |
T |
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