View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16209_high_2 (Length: 326)
Name: NF16209_high_2
Description: NF16209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16209_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 43407848 - 43408147
Alignment:
| Q |
19 |
gatgtggtatttctaatgattggcaatgaaaagaagaagaaaa-----atgagagcaaagtgacaattaaggaacctacctgatcaaagagggactgttt |
113 |
Q |
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| T |
43407848 |
gatgtggtatttctaatgattggcaatgaaaagaagaagaaaagaaaaatgagagcaa-gtgacaattaaggaacctacctgatcaaagagggactgttt |
43407946 |
T |
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| Q |
114 |
cattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgattagaagaagctgaatggacacagaaagaataaaataagggaatgaacaatg |
213 |
Q |
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| T |
43407947 |
cattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgattagaagaagctgaatggacacagaaagaataaaataagggaatgaacaatg |
43408046 |
T |
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| Q |
214 |
ttgtgtaactagttgttgtagttggaattaaaatacatgattttgaagtgagggtgtggcagggtttttatagcactcaaaaaatgttctgtcctatgct |
313 |
Q |
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| T |
43408047 |
ttgtgtaactagttgttgtagttggaattaaaatacatgattttgaagtgagggtgtggcagggtttttatagcactcaaaaaatgttctgtcctatgct |
43408146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 43395678 - 43395799
Alignment:
| Q |
73 |
gtgacaattaaggaacctacctgatcaaagagggactgtttcattgcagcaagttgcctgcgagaattgtttctgtccatgattgatgatt---agaaga |
169 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
43395678 |
gtgaaaattaaggaacctacttgatcaaagagggactgtttcattgcagcaagttgtctgcgagaattgtttctgtccatgattgatgattagaagaaga |
43395777 |
T |
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| Q |
170 |
agctgaatggacacagaaagaa |
191 |
Q |
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| T |
43395778 |
agctgaagggacacagaaagaa |
43395799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 43395869 - 43395909
Alignment:
| Q |
274 |
agggtttttatagcactcaaaaaatgttctgtcctatgctt |
314 |
Q |
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| T |
43395869 |
agggtttttatagcacccaaaagatgtcctgtcctatgctt |
43395909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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