View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16209_low_1 (Length: 583)
Name: NF16209_low_1
Description: NF16209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16209_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 19 - 564
Target Start/End: Original strand, 29980184 - 29980737
Alignment:
| Q |
19 |
aaagggtcaaagaaaagaggtttgtgtttgtgtttgggtttggtttgactcagtagcaacagatgaagaagaaagaaagtgagacttgggtgagtggtgt |
118 |
Q |
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| T |
29980184 |
aaagggtcaaagaaaagaggttt------gtgtttgggtttggtttgactcagtagcaacagatgaagaagaaagaaagtgagacttgggtgagtggtgt |
29980277 |
T |
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| Q |
119 |
ggtcttggccccgtcggcggtctggtctatgccaaggctcaaggctggcaaccttccataattttctcaccaacacgtgggcaaccgcagacacacgttt |
218 |
Q |
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| T |
29980278 |
ggtcttggccccgtcggcggtctggtctatgccaaggctcaaggctggcaaccttccataattttctcaccaacacgtgggcaaccgcagacacacgttt |
29980377 |
T |
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| Q |
219 |
gattaaattttgtgagtgaaaatctacttgtgctattgtaattgtaattatataggtattgttccagaatgaatgcatgcatgcatgtatataagatagt |
318 |
Q |
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| T |
29980378 |
gattaaattttgtgagtgaaaatctacttgtgctattgtaattgtaattatataagtattgttccagaatgaatgcatgcatgcatgtatataagatagt |
29980477 |
T |
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| Q |
319 |
ggtaatcatatctg------nnnnnnnnnaatcattgtagtcttcttaaactagttgaatatcaccttttttctcgaaaacctagtatcgtatagctagc |
412 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29980478 |
ggcaatcatatctgtttttttttttttttaatcattgtagtcttcttaaactagttgaatatcaccttttttctcgaaaacctagtatcgtatagctagc |
29980577 |
T |
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| Q |
413 |
---------cattaaagttggtaaaagaattatcatagatgaataaaaaacatttgattggtaaattaaagttatcgatggcttaattgtgtcgtgaacg |
503 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29980578 |
cacaaaaggcattaaagttggtaaaagaattatcatagatgaataaaaaacatttgattggtaaattaaagttatcgatggcttaattatgtcgtgaacg |
29980677 |
T |
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| Q |
504 |
ttaacggtaactactagatggtacaccatatatatataagattatcgctacacatgcaatt |
564 |
Q |
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| T |
29980678 |
ttaacggtaactactagatggtgcaccatatatata-aagattatcgctacacatgcaatt |
29980737 |
T |
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