View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16209_low_4 (Length: 254)
Name: NF16209_low_4
Description: NF16209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16209_low_4 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 16384299 - 16384528
Alignment:
| Q |
10 |
attattctacataatttatatagatatagtcattattcattaagtcatgtgggtacctcaatccgagaaagtctatcagtcaccatacaaagattctttg |
109 |
Q |
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| T |
16384299 |
attattccacataatttatatagatatagtcattattcgttaagtcatgtgggtacctcaatccgagaaagtctatcagtcaccatacaaagattctttg |
16384398 |
T |
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| Q |
110 |
ggttgcttccaaatttcatgatatttttctgcattttctcgtatttagcctgtcaaattgtaaaatcaccatgtgaatactaaaagcatcaagagtaatg |
209 |
Q |
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| T |
16384399 |
agttgcttccaaatttctggatatttttctgcattttctcgtatttagcctgtcaaattgtaaaatcaccatgtgaacactaaaagcatcaagagtaatg |
16384498 |
T |
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| Q |
210 |
ttatttgaacctatgtactgacaacaaata |
239 |
Q |
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| T |
16384499 |
ttatttgaacctatgtactaacaacaaata |
16384528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 14954 - 14795
Alignment:
| Q |
60 |
gggtacctcaatccgagaaagtctatcagtcaccatacaaagattctttgggttgcttccaaatttcatgatatttttctgcattttctcgtatttagcc |
159 |
Q |
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| T |
14954 |
gggtacctcgatccgagaaggtctatcagtcaccatacaaagattctttaggttgcttccgaatttgtcaatatttttttgcattttctcgtatttggcc |
14855 |
T |
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| Q |
160 |
tgtcaaattgtaaaatcaccatgtgaatactaaaagcatcaagagtaatgttatttgaac |
219 |
Q |
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| T |
14854 |
tgtcaaattgtaaaatcatcatgtgaacgctaaaaacattaagagtaatgttatttgaac |
14795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 271002 - 270961
Alignment:
| Q |
63 |
tacctcaatccgagaaagtctatcagtcaccatacaaagatt |
104 |
Q |
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| T |
271002 |
tacctcaatccgagaaggtctgtcagtcaccatacgaagatt |
270961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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