View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1620_low_1 (Length: 351)

Name: NF1620_low_1
Description: NF1620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1620_low_1
NF1620_low_1
[»] chr3 (22 HSPs)
chr3 (200-341)||(8400810-8400951)
chr3 (201-341)||(7417754-7417894)
chr3 (201-341)||(35198721-35198861)
chr3 (195-341)||(22855837-22855983)
chr3 (200-341)||(48077977-48078118)
chr3 (228-341)||(50823681-50823794)
chr3 (228-341)||(50852066-50852179)
chr3 (216-341)||(43334090-43334215)
chr3 (213-338)||(34824524-34824649)
chr3 (210-341)||(55467964-55468096)
chr3 (207-341)||(52545283-52545417)
chr3 (274-344)||(22371762-22371832)
chr3 (260-341)||(29635883-29635964)
chr3 (230-345)||(50726029-50726144)
chr3 (230-345)||(50786704-50786819)
chr3 (292-341)||(30534938-30534987)
chr3 (292-341)||(37330643-37330692)
chr3 (268-340)||(19872520-19872592)
chr3 (219-339)||(42876189-42876309)
chr3 (292-339)||(37454782-37454829)
chr3 (200-293)||(39438903-39438996)
chr3 (277-328)||(25589253-25589304)
[»] chr7 (17 HSPs)
chr7 (201-341)||(35109647-35109787)
chr7 (201-341)||(38265273-38265413)
chr7 (201-341)||(21577134-21577274)
chr7 (201-341)||(34721790-34721930)
chr7 (201-339)||(16059391-16059529)
chr7 (201-341)||(38405190-38405330)
chr7 (212-341)||(41151139-41151269)
chr7 (201-341)||(18116980-18117120)
chr7 (201-345)||(11216725-11216869)
chr7 (206-341)||(45278413-45278548)
chr7 (239-340)||(12472115-12472216)
chr7 (206-339)||(48176361-48176493)
chr7 (263-341)||(37095246-37095324)
chr7 (259-341)||(245300-245382)
chr7 (246-339)||(23028684-23028777)
chr7 (277-333)||(28407540-28407596)
chr7 (201-293)||(40038621-40038713)
[»] chr1 (17 HSPs)
chr1 (201-341)||(30054478-30054618)
chr1 (201-341)||(30370096-30370236)
chr1 (201-345)||(45323962-45324106)
chr1 (200-341)||(20014413-20014554)
chr1 (206-341)||(21090076-21090211)
chr1 (200-341)||(12025136-12025277)
chr1 (225-345)||(4573359-4573479)
chr1 (207-341)||(33763290-33763424)
chr1 (273-341)||(14498115-14498183)
chr1 (274-341)||(22024132-22024199)
chr1 (237-340)||(30850877-30850980)
chr1 (201-345)||(35617936-35618075)
chr1 (201-291)||(15034411-15034501)
chr1 (259-341)||(44438586-44438668)
chr1 (289-341)||(35371781-35371833)
chr1 (274-341)||(33762576-33762643)
chr1 (317-345)||(17015192-17015220)
[»] scaffold0021 (1 HSPs)
scaffold0021 (201-341)||(107727-107867)
[»] chr4 (23 HSPs)
chr4 (201-341)||(51066449-51066589)
chr4 (201-337)||(8740404-8740540)
chr4 (201-339)||(46494436-46494574)
chr4 (201-336)||(39863819-39863954)
chr4 (207-341)||(32139126-32139260)
chr4 (201-341)||(7173621-7173761)
chr4 (199-339)||(36192496-36192635)
chr4 (201-337)||(50905704-50905840)
chr4 (225-345)||(51713997-51714117)
chr4 (225-339)||(30970422-30970536)
chr4 (209-303)||(2294784-2294878)
chr4 (274-341)||(29576444-29576511)
chr4 (283-341)||(676766-676824)
chr4 (260-341)||(2570216-2570297)
chr4 (278-339)||(41523430-41523491)
chr4 (277-345)||(22423408-22423476)
chr4 (274-341)||(55231716-55231783)
chr4 (259-325)||(50399694-50399760)
chr4 (239-341)||(47627029-47627133)
chr4 (283-338)||(51279072-51279127)
chr4 (278-336)||(4080593-4080651)
chr4 (301-339)||(22304129-22304167)
chr4 (201-240)||(51066205-51066244)
[»] chr2 (26 HSPs)
chr2 (201-341)||(44650349-44650489)
chr2 (201-339)||(40155996-40156134)
chr2 (200-341)||(6672829-6672970)
chr2 (198-339)||(5039373-5039514)
chr2 (227-341)||(36836365-36836479)
chr2 (201-339)||(36380170-36380308)
chr2 (201-338)||(17136343-17136480)
chr2 (198-335)||(25987704-25987841)
chr2 (201-341)||(2754087-2754227)
chr2 (201-341)||(10745268-10745408)
chr2 (238-341)||(45137006-45137109)
chr2 (199-341)||(26690108-26690250)
chr2 (201-330)||(7860193-7860322)
chr2 (201-337)||(30372720-30372856)
chr2 (217-341)||(21637869-21637993)
chr2 (70-157)||(2224436-2224523)
chr2 (201-337)||(2357116-2357251)
chr2 (210-341)||(3200847-3200977)
chr2 (201-341)||(21487106-21487244)
chr2 (268-339)||(558477-558548)
chr2 (207-341)||(13047192-13047318)
chr2 (150-200)||(2223989-2224039)
chr2 (237-336)||(33066582-33066681)
chr2 (200-278)||(2098939-2099017)
chr2 (213-336)||(4553599-4553723)
chr2 (260-314)||(20961496-20961550)
[»] chr8 (19 HSPs)
chr8 (198-341)||(19723264-19723407)
chr8 (200-341)||(32296675-32296816)
chr8 (201-341)||(4840096-4840236)
chr8 (201-341)||(11403957-11404097)
chr8 (201-341)||(24475032-24475172)
chr8 (200-337)||(22711464-22711601)
chr8 (201-321)||(27881044-27881164)
chr8 (201-321)||(28021225-28021345)
chr8 (206-339)||(28739599-28739732)
chr8 (226-341)||(29767169-29767282)
chr8 (200-341)||(30682794-30682935)
chr8 (201-335)||(11610236-11610370)
chr8 (263-341)||(17095568-17095646)
chr8 (221-341)||(41553261-41553381)
chr8 (274-341)||(21355020-21355087)
chr8 (278-341)||(36261679-36261742)
chr8 (278-341)||(43288105-43288168)
chr8 (206-272)||(6097525-6097591)
chr8 (291-341)||(11909459-11909509)
[»] chr6 (9 HSPs)
chr6 (201-341)||(35163786-35163926)
chr6 (207-341)||(2711770-2711904)
chr6 (207-335)||(19686869-19686997)
chr6 (206-299)||(14496313-14496406)
chr6 (268-341)||(20685348-20685421)
chr6 (201-337)||(14505564-14505698)
chr6 (268-340)||(17948703-17948775)
chr6 (274-341)||(15070154-15070221)
chr6 (263-341)||(24336633-24336711)
[»] chr5 (5 HSPs)
chr5 (200-341)||(17064278-17064419)
chr5 (199-341)||(20983039-20983181)
chr5 (229-341)||(37976530-37976646)
chr5 (207-297)||(35237103-35237193)
chr5 (212-341)||(41910793-41910920)
[»] scaffold0691 (1 HSPs)
scaffold0691 (200-339)||(7007-7142)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 8400810 - 8400951
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  8400810 aaactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaa 8400909  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8400910 ttacctttgtaagtgctctttgagcccgaaggtcttccctgc 8400951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 7417754 - 7417894
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  7417754 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 7417853  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  7417854 tacctttgtaagtgctctttgagcccgaaggtcttcactgc 7417894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 35198721 - 35198861
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||  |||||||| ||||||||||||||||     
T  35198721 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaa 35198820  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  35198821 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 35198861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 195 - 341
Target Start/End: Original strand, 22855837 - 22855983
Alignment:
Q  195 ttcaaaaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaa 294  Q
    ||||| |||| |||||| |||||||||||||||||||||| ||||| ||| |||||||||||  |||||||| ||||| ||| |||||||||||||||||    
T  22855837 ttcaataactccaaaggtttggtctagtggtaaaaagacaggtcttaaattcgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaa 22855936  T
Q  295 tgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  22855937 tgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgc 22855983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 200 - 341
Target Start/End: Complemental strand, 48078118 - 48077977
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    |||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| || ||||||||  | || ||||||||||||| ||||||||||||    
T  48078118 aaacttcaaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgtaa 48078019  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
     || ||||||||||| |||||||||| |||||||||||||||    
T  48078018 atatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 50823681 - 50823794
Alignment:
Q  228 aaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccg 327  Q
    |||||||||||||||||||||||||| ||| |||||||  ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50823681 aaagacaagtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccg 50823780  T
Q  328 aaggtcttccctgc 341  Q
    ||||||||||||||    
T  50823781 aaggtcttccctgc 50823794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 50852179 - 50852066
Alignment:
Q  228 aaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccg 327  Q
    |||||||||||||||||||||||||| ||| |||||||  ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50852179 aaagacaagtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccg 50852080  T
Q  328 aaggtcttccctgc 341  Q
    ||||||||||||||    
T  50852079 aaggtcttccctgc 50852066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 341
Target Start/End: Complemental strand, 43334215 - 43334090
Alignment:
Q  216 gtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtga 315  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||| ||| ||||||||||     
T  43334215 gtctagaggtaaaatgacaagttttgaatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgtaaatacttttgtaagtgc 43334116  T
Q  316 tctttgagcccgaaggtcttccctgc 341  Q
    | ||||||||||||||||||||||||    
T  43334115 tatttgagcccgaaggtcttccctgc 43334090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 34824524 - 34824649
Alignment:
Q  213 ttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaag 312  Q
    |||||||||||||||||||| |  ||||||||||||||||||| |||||||||  ||| | ||||||||| ||||||||||||||||||| |||||||||    
T  34824524 ttggtctagtggtaaaaagatagatcttgaatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttgtaag 34824623  T
Q  313 tgatctttgagcccgaaggtcttccc 338  Q
    || ||||||| |||||||||||||||    
T  34824624 tgctctttgatcccgaaggtcttccc 34824649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 210 - 341
Target Start/End: Original strand, 55467964 - 55468096
Alignment:
Q  210 ggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgt 309  Q
    |||||||||||||||||||| |||| ||||||||| |||||||| ||| |||||||| || ||  ||| ||||||||||||||||||||| |||||||||    
T  55467964 ggcttggtctagtggtaaaatgacatgtcttgaattcgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttgt 55468063  T
Q  310 aagtgatctttgag-cccgaaggtcttccctgc 341  Q
    ||||| |||||||| ||||||||||||| ||||    
T  55468064 aagtgctctttgagccccgaaggtcttctctgc 55468096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 52545283 - 52545417
Alignment:
Q  207 aaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctt 306  Q
    ||||| ||||||| ||| ||||| |||| ||||||||||||||| ||  || |||||||| ||||| ||||||||  |||||||||||||||| ||| ||    
T  52545283 aaaggtttggtctggtgataaaatgacaggtcttgaatccgagaaaattcgggttcgagccccgctagtgcctttaaagggaggtaaatgtaaatacttt 52545382  T
Q  307 tgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||  ||||||||||||||||||||||||||    
T  52545383 tgtaagtagtctttgagcccgaaggtcttccctgc 52545417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 22371832 - 22371762
Alignment:
Q  274 gtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgcttt 344  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  22371832 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgcttt 22371762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 29635883 - 29635964
Alignment:
Q  260 ttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||  |||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  29635883 ttcgagcctcgctagtgcctttgaagggaggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgc 29635964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 345
Target Start/End: Complemental strand, 50726144 - 50726029
Alignment:
Q  230 agacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaa 329  Q
    ||||| ||||||||||||||||||  || |||||||| ||| | ||| ||||||||| |||||||| ||||||| |||||||||  | ||||||  ||||    
T  50726144 agacaggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaa 50726045  T
Q  330 ggtcttccctgctttg 345  Q
     ||||||||| |||||    
T  50726044 agtcttccctactttg 50726029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 50786704 - 50786819
Alignment:
Q  230 agacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaa 329  Q
    ||||| ||||||||||||||||||  || |||||||| ||| | ||| ||||||||| |||||||| ||||||| |||||||||  | ||||||  ||||    
T  50786704 agacaggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttgtaagttctttttgagttcgaa 50786803  T
Q  330 ggtcttccctgctttg 345  Q
     ||||||||| |||||    
T  50786804 agtcttccctactttg 50786819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 30534987 - 30534938
Alignment:
Q  292 aaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgc 30534938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 37330692 - 37330643
Alignment:
Q  292 aaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgc 37330643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 19872592 - 19872520
Alignment:
Q  268 ccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctg 340  Q
    ||||| ||||||||||||| |||||||  |||||||||||||||||  |||||||  ||||||||||||||||    
T  19872592 ccgcttgtgcctttggaggaaggtaaaattaattacctttgtaagtactctttgaatccgaaggtcttccctg 19872520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 42876189 - 42876309
Alignment:
Q  219 tagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatct 318  Q
    |||||||||||||| |  ||||| || |||| || | ||||||||||| |  || ||| |||| || ||||||||||||||||||||||||||||| |||    
T  42876189 tagtggtaaaaagatagatcttgtattcgagggatctcgagttcgagcccgactagtgtctttagatggaggtaaatgtaattacctttgtaagtgctct 42876288  T
Q  319 ttgagcccgaaggtcttccct 339  Q
    |||| |  ||| |||||||||    
T  42876289 ttgaacttgaatgtcttccct 42876309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 37454829 - 37454782
Alignment:
Q  292 aaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  37454829 aaatataattacctttgtaagtgctctttgagcccgaaggtcttccct 37454782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 39438996 - 39438903
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaa 293  Q
    |||||||||||||||| | ||||| ||||||||||  ||||||||||||||||| ||  |||| |  |||||| |||||||| |||| ||||||    
T  39438996 aaacttcaaaggcttgctatagtgttaaaaagacagatcttgaatccgagagaatccaggttcaaattccgctagtgcctttagaggaaggtaa 39438903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 25589253 - 25589304
Alignment:
Q  277 cctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccga 328  Q
    |||||||| |||||||||||||| |||||| ||||||| |||||||| ||||    
T  25589253 cctttggaaggaggtaaatgtaaataccttagtaagtgctctttgagtccga 25589304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 35109647 - 35109787
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||    
T  35109647 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaat 35109746  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  35109747 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 35109787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 38265413 - 38265273
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||    
T  38265413 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 38265314  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  38265313 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 38265273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 21577274 - 21577134
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||  |||||||||||||||||||||||||     
T  21577274 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaa 21577175  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  21577174 tacctttgtaagtgctctttgagtccgaaggtcttccctgc 21577134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 34721790 - 34721930
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||| ||| ||||| |||||||||||||||||||||||||||    
T  34721790 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaat 34721889  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  34721890 tacctttgtaagtgctctttgagcccgaaggacttccctgc 34721930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 16059529 - 16059391
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||||||    
T  16059529 aactccaaaggcttggactagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaat 16059430  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  16059429 tacctttgtaagtgctctctgagcccgaaggtcttccct 16059391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 38405330 - 38405190
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||  |||| |||||||||||||||||||||||||||    
T  38405330 aacttcaaaggcttcgtctagtggtaaaaagacaggtcttgaatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaat 38405231  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    || ||||||||||| ||||||| ||||||||||||||||||    
T  38405230 tatctttgtaagtgctctttgaacccgaaggtcttccctgc 38405190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 212 - 341
Target Start/End: Original strand, 41151139 - 41151269
Alignment:
Q  212 cttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacc-tttgta 310  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||    
T  41151139 cttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttttgta 41151238  T
Q  311 agtgatctttgagcccgaaggtcttccctgc 341  Q
    |||| ||||||||||||||||||||||||||    
T  41151239 agtgctctttgagcccgaaggtcttccctgc 41151269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 18117120 - 18116980
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||  |||| |||||||| ||||||||||||||||||    
T  18117120 aactccaaaggcttgttctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaat 18117021  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||| ||| ||||||||  ||||| ||||||||||    
T  18117020 tacctttgtaggtgctctttgaggtcgaagatcttccctgc 18116980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 11216725 - 11216869
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||| ||||||||||||||||  |||| |||||||||| ||||||||||| |||||||| ||  | ||||||||||||||||||||||||||     
T  11216725 aactccaaaggtttggtctagtggtaaagtgacaggtcttgaatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaa 11216824  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgctttg 345  Q
    |||||||||||||| ||||||||||||||||||||| || |||||    
T  11216825 tacctttgtaagtgctctttgagcccgaaggtcttctctactttg 11216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 341
Target Start/End: Original strand, 45278413 - 45278548
Alignment:
Q  206 caaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacct 305  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||||| ||||| ||||||||| ||||| ||||||||||||| ||    
T  45278413 caaagtcttggtctagtggtaaaaagataggtcttgaatccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatct 45278512  T
Q  306 ttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||| ||||| | |||||| |||||||||||    
T  45278513 ttgtaagtgctctttaaacccgaatgtcttccctgc 45278548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 12472115 - 12472216
Alignment:
Q  239 ttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccc 338  Q
    ||||||||||||||||||| |||||||| || || |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  12472115 ttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccc 12472214  T
Q  339 tg 340  Q
    ||    
T  12472215 tg 12472216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 48176361 - 48176493
Alignment:
Q  206 caaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacct 305  Q
    ||||||||||||||| |||||||||||||  |||| |||||||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||| ||| |    
T  48176361 caaaggcttggtcta-tggtaaaaagacagatcttaaatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgtaaatactt 48176459  T
Q  306 ttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    ||||||||| | |||||||| |||||| ||||||    
T  48176460 ttgtaagtgttttttgagccggaaggttttccct 48176493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 37095324 - 37095246
Alignment:
Q  263 gagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37095324 gagccccgctagtgtctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 37095246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 245382 - 245300
Alignment:
Q  259 gttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||    
T  245382 gttcgagccccgctagtgcccttggagggaggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgc 245300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 23028684 - 23028777
Alignment:
Q  246 cgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    |||||||| ||| |||||| |||| ||  ||||||| |||||| |||||||||||||||||| |||||| | ||||| |||||||| |||||||    
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattacctttataagtgttttttgaacccgaaggccttccct 23028777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 28407540 - 28407596
Alignment:
Q  277 cctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtc 333  Q
    ||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  28407540 cctttagagggaggtaaatgtaaatacttttgtaagtgctctttgagcccgaaggtc 28407596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 40038621 - 40038713
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaa 293  Q
    |||| ||||| |||| |||||||||||||||||| |||||||||| ||||||||| || ||| ||  ||| | ||||||||| || |||||||    
T  40038621 aactccaaagacttgatctagtggtaaaaagacaggtcttgaatctgagagaacctgaattcaagtcccgttagtgcctttgaagagaggtaa 40038713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 30054618 - 30054478
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  30054618 aactccaaaggcttggtctagtggtaaaaagtcaagtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 30054519  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  30054518 tacctttgtaaatgctctttgagcccgaaggtcttccctgc 30054478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 30370236 - 30370096
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||| || || ||| |||||||||||||||||||||||    
T  30370236 aactccaaaggcttggtctagtggtaaaaagacaagttttgaattcgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaat 30370137  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  30370136 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 30370096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 45323962 - 45324106
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | |||| ||| ||||| |||| |||||||||||||||||||||     
T  45323962 aactccaaaggcttggtctagtggtaaaacgacaggtcttgaatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaa 45324061  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgctttg 345  Q
    |||||||||||||| || |||||||||||||||||||||||||||    
T  45324062 tacctttgtaagtgctccttgagcccgaaggtcttccctgctttg 45324106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 20014413 - 20014554
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||| |||||||  ||||| || |||||||||||||||||||||||    
T  20014413 aaactccaaagtcttggtctagtggtaaaaagacagatcttgaatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaa 20014512  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||| ||||||| || |||||||||| |||||||||||||||    
T  20014513 ttacatttgtaaatgctctttgagcctgaaggtcttccctgc 20014554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 206 - 341
Target Start/End: Original strand, 21090076 - 21090211
Alignment:
Q  206 caaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacct 305  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||  || |||||||| ||||| ||||| |||||||||||||||||||| ||| |    
T  21090076 caaaggcttggtctagtggtaaaatgacaggtcttgaattcgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgtaaatacat 21090175  T
Q  306 ttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||| || ||||||||||||||||||||||||||    
T  21090176 ttgtaaatgctctttgagcccgaaggtcttccctgc 21090211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 12025136 - 12025277
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| ||||| ||||||||||||||||||| |||  |||||||| |||||||||| | |||||||| ||  | ||||||||||||| ||||||||||||    
T  12025136 aaactccaaagacttggtctagtggtaaaaatacagatcttgaattcgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaa 12025235  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||  | ||||||||||||||||||||||||    
T  12025236 ttacctttgtaagtactatttgagcccgaaggtcttccctgc 12025277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 225 - 345
Target Start/End: Original strand, 4573359 - 4573479
Alignment:
Q  225 taaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagc 324  Q
    |||||||||| |||||||||||||||||||||| |||||||| || ||  || |||||||||||||||||||||| |||||||||||||| |||||||||    
T  4573359 taaaaagacaggtcttgaatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttgtaagtgctctttgagc 4573458  T
Q  325 ccgaaggtcttccctgctttg 345  Q
     ||||||||||||||| ||||    
T  4573459 tcgaaggtcttccctgttttg 4573479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 33763424 - 33763290
Alignment:
Q  207 aaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctt 306  Q
    ||||| |||||||||| ||||||||||| ||||||||| |||||||| |   |||||||| ||||| |||||||| |||||||| |||||||||||||||    
T  33763424 aaaggtttggtctagtagtaaaaagacaggtcttgaattcgagagaatctaggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctt 33763325  T
Q  307 tgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||| | |||||||||||| || ||||||||    
T  33763324 tgtaagtgttttttgagcccgaaagttttccctgc 33763290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 14498183 - 14498115
Alignment:
Q  273 ggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  14498183 ggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgc 14498115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 22024132 - 22024199
Alignment:
Q  274 gtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  22024132 gtgcctttggatggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgc 22024199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 30850980 - 30850877
Alignment:
Q  237 tcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttc 336  Q
    |||| ||||||||||||| || |||||||| ||| | ||| |||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||     
T  30850980 tcttaaatccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttgtaagtgctctttgaacccgaaggtcttt 30850881  T
Q  337 cctg 340  Q
    ||||    
T  30850880 cctg 30850877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 35617936 - 35618075
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    ||||| ||||| ||||||||||||||||| |||| ||||||||||| ||||||||    ||||||||||| | ||||||||  ||||| |||||||||      
T  35617936 aactttaaaggtttggtctagtggtaaaatgacaggtcttgaatccaagagaacctagattcgagctccgttagtgcctttc-agggatgtaaatgtag- 35618033  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgctttg 345  Q
       ||||||||||| |||||||||||||||||||||| |||||||    
T  35618034 ---ctttgtaagtgctctttgagcccgaaggtcttccttgctttg 35618075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 15034411 - 15034501
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggt 291  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||  |||||||| |  || ||||||||||||||||||    
T  15034411 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 341
Target Start/End: Complemental strand, 44438668 - 44438586
Alignment:
Q  259 gttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||||| |   ||||||||||||||||    
T  44438668 gttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgc 44438586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 35371833 - 35371781
Alignment:
Q  289 ggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgc 35371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 33762643 - 33762576
Alignment:
Q  274 gtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| || ||||||||    
T  33762643 gtgcctttagagggaggcaaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgc 33762576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 17015192 - 17015220
Alignment:
Q  317 ctttgagcccgaaggtcttccctgctttg 345  Q
    |||||||||||||||||||||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttg 17015220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 107867 - 107727
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  107867 aactccaaagacttggtctagtggtaaaaagacaggtcttgaattcgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaat 107768  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  107767 tacctttgtaagtgctctttgagcccgaaggtctaccctgc 107727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 51066449 - 51066589
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||    
T  51066449 aactccaaagacttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataat 51066548  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  51066549 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 51066589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 201 - 337
Target Start/End: Original strand, 8740404 - 8740540
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||     
T  8740404 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaa 8740503  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttcc 337  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8740504 tacctttgtaagtgctctttgagcccgaaggtcttcc 8740540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 46494574 - 46494436
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||     
T  46494574 aactccaaaggtttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaa 46494475  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  46494474 tacctttgtaagtgctctttgagcccgaaggtcttccct 46494436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 201 - 336
Target Start/End: Complemental strand, 39863954 - 39863819
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  | ||||| ||||||||||||||| |||||||||||    
T  39863954 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaat 39863855  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttc 336  Q
    |||||||||||||| ||||||| |||||||||||||    
T  39863854 tacctttgtaagtgctctttgaacccgaaggtcttc 39863819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 32139126 - 32139260
Alignment:
Q  207 aaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctt 306  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||||| | |||||| | ||||| ||| |||||||||||||||||||||||||||||    
T  32139126 aaaggcttggtctagtggtaaaaggacaggtcatgaatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctt 32139225  T
Q  307 tgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||| |||||||||| |||||||||| ||||    
T  32139226 tgtaagtgttctttgagcctgaaggtcttctctgc 32139260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 7173761 - 7173621
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||   |||| ||  ||||| ||||||||||| |||||||||||| |     
T  7173761 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaa 7173662  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  7173661 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 7173621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 339
Target Start/End: Original strand, 36192496 - 36192635
Alignment:
Q  199 aaaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgta 298  Q
    |||||| |||||| || |||| |||||||||||||| ||||||||| |||||||||||| |||||||| || || |||||||||||||||||||||||||    
T  36192496 aaaactccaaaggtttagtct-gtggtaaaaagacaggtcttgaattcgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgta 36192594  T
Q  299 attacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    ||||| ||||||| || ||||||||||||||||||||||||    
T  36192595 attacttttgtaaatgctctttgagcccgaaggtcttccct 36192635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 201 - 337
Target Start/End: Original strand, 50905704 - 50905840
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||| || ||||||||||||||||||| |||||||||||||||||| | | |||||||| ||||| |||||||||||| ||||||||||||||    
T  50905704 aactccaaaggtttagtctagtggtaaaaagacaggtcttgaatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaat 50905803  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttcc 337  Q
    || ||||||| ||| |||||||| |||||||||||||    
T  50905804 tatctttgtaggtgctctttgagtccgaaggtcttcc 50905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 51714117 - 51713997
Alignment:
Q  225 taaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagc 324  Q
    ||||| |||| |||||||||||||||||||||| |||||||| || || ||||||||| |||||||||||| ||| |||||||||||||| |||||||||    
T  51714117 taaaatgacaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttgtaagtgctctttgagc 51714018  T
Q  325 ccgaaggtcttccctgctttg 345  Q
    |||||||||||||||||||||    
T  51714017 ccgaaggtcttccctgctttg 51713997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 339
Target Start/End: Complemental strand, 30970536 - 30970422
Alignment:
Q  225 taaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagc 324  Q
    ||||| |||| |||||||||||||||||| ||| ||||||||  | || ||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  30970536 taaaatgacaggtcttgaatccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttgtaagtgctctttgagc 30970437  T
Q  325 ccgaaggtcttccct 339  Q
     ||||||||||||||    
T  30970436 tcgaaggtcttccct 30970422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 2294878 - 2294784
Alignment:
Q  209 aggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattac 303  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| || ||||||| | |||| ||||||||||||| ||||||||||||||||    
T  2294878 aggcttggtctagtggtaaaaagacaggtcttgaattcgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac 2294784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 29576444 - 29576511
Alignment:
Q  274 gtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  29576444 gtgcctttggagggaggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgc 29576511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 676766 - 676824
Alignment:
Q  283 gagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  676766 gagggaggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgc 676824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 2570216 - 2570297
Alignment:
Q  260 ttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||||||||||||||||||||||||| ||| || | || ||| || |||||||| |||||| ||||||||||    
T  2570216 ttcgagctccgctggtgcctttggagggaggtaaatataaatatcattataaatgttctttgagtccgaagatcttccctgc 2570297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 41523430 - 41523491
Alignment:
Q  278 ctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||    
T  41523430 ctttggagggaggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccct 41523491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 22423408 - 22423476
Alignment:
Q  277 cctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgctttg 345  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||| |  ||||||||||||||||||||    
T  22423408 cctttggagggaggtaaatgtaaatacttttgtaagtgttctttgtgttcgaaggtcttccctgctttg 22423476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 55231716 - 55231783
Alignment:
Q  274 gtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||| |||||||||||||||| ||| |||||||||| |||||||||| ||| |||||||||||    
T  55231716 gtgcctttgaagggaggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgc 55231783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 50399760 - 50399694
Alignment:
Q  259 gttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcc 325  Q
    |||||||| ||||| ||||  ||||||| |||||||||||| |||||||||||||| ||||||||||    
T  50399760 gttcgagccccgctagtgctcttggaggaaggtaaatgtaaatacctttgtaagtgttctttgagcc 50399694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 341
Target Start/End: Complemental strand, 47627133 - 47627029
Alignment:
Q  239 ttgaatccgagagaacccgagttcgag--ctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttc 336  Q
    |||||||||||||||||||  ||||||  | || || ||||||||| |||||||||||||||| ||||| | ||| |  ||||||| | |||||||||||    
T  47627133 ttgaatccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgtaaatacctctataaatactctttgaactcgaaggtcttc 47627034  T
Q  337 cctgc 341  Q
    |||||    
T  47627033 cctgc 47627029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 338
Target Start/End: Complemental strand, 51279127 - 51279072
Alignment:
Q  283 gagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccc 338  Q
    ||||||||| ||||||| ||| |||||||||| ||||||||||| |||||||||||    
T  51279127 gagggaggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttccc 51279072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 4080651 - 4080593
Alignment:
Q  278 ctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttc 336  Q
    |||||||||||||||||||||||||| ||||||| || |||||||| | ||| ||||||    
T  4080651 ctttggagggaggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttc 4080593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 22304167 - 22304129
Alignment:
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  22304167 tacctttgtaagtgctctttgagcccgaaggtcttccct 22304129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 51066205 - 51066244
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtctt 240  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  51066205 aactccaaagacttggtctagtggtaaaaagacaagtctt 51066244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 44650349 - 44650489
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  44650349 aactccaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaat 44650448  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| |||||||| |||||| ||||||||||    
T  44650449 tacctttgtaagtgctctttgagtccgaagatcttccctgc 44650489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 201 - 339
Target Start/End: Original strand, 40155996 - 40156134
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||    
T  40155996 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaat 40156095  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40156096 tacctttgtaagtgctctttgagcccgaaggtcttccct 40156134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 200 - 341
Target Start/End: Complemental strand, 6672970 - 6672829
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||    
T  6672970 aaactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaa 6672871  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||| | | ||||||||||||||||||||||||||    
T  6672870 ttacctttgtacgcgctctttgagcccgaaggtcttccctgc 6672829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 198 - 339
Target Start/End: Original strand, 5039373 - 5039514
Alignment:
Q  198 aaaaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgt 297  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||| ||| |||||||||||| ||    
T  5039373 aaaaactccaaaggcttggtatagtggtaaaaagacaggtcttgaatccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgt 5039472  T
Q  298 aattacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  5039473 aattacctttgtaagtgctctttgagcccgaagatcttccct 5039514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 36836479 - 36836365
Alignment:
Q  227 aaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagccc 326  Q
    |||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36836479 aaaagacaggtcttgaatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagccc 36836380  T
Q  327 gaaggtcttccctgc 341  Q
    |||| ||||||||||    
T  36836379 gaagatcttccctgc 36836365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 201 - 339
Target Start/End: Complemental strand, 36380308 - 36380170
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||| || ||| || | ||||| |||||||||||||||||||||||||||    
T  36380308 aacttcaaaggcttggtctagtggtaaacagacaggtcttgaattcgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaat 36380209  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    | |||||||||||| ||||||||||||||||||||||||    
T  36380208 tccctttgtaagtgctctttgagcccgaaggtcttccct 36380170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 201 - 338
Target Start/End: Original strand, 17136343 - 17136480
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||| ||||| |||| || ||||||| ||||||||||| |||||||| ||| | ||||||||||||||||||||||||||     
T  17136343 aactccaaaggcttggtctagtgataaaatgacaggttttgaatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaa 17136442  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccc 338  Q
    |||||||||||||| |||||||||||||||||||||||    
T  17136443 tacctttgtaagtgctctttgagcccgaaggtcttccc 17136480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 25987841 - 25987704
Alignment:
Q  198 aaaaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgt 297  Q
    ||||||| |||||||||| |  | ||||||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||    
T  25987841 aaaaactccaaaggcttgatacaatggtaaaaagacaggtcttgaatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgt 25987742  T
Q  298 aattacctttgtaagtgatctttgagcccgaaggtctt 335  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  25987741 aattacctttgtaagtgctctttgagtccgaaggtctt 25987704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 2754227 - 2754087
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||  ||||||  || ||  |||||||||||||||||||||||||     
T  2754227 aacttcaaaggcttggtttagtggtaaaatgacaggtcttgaatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaa 2754128  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  2754127 tacctttgtaagtgctctttgagctcgaaggtcttccctgc 2754087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 10745408 - 10745268
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||| |||||||||||||||| ||||||||| |||||||||||| || ||||| ||||| |||||||| ||||||||||||||||||    
T  10745408 aactccaaaggcttggtttagtggtaaaaagacaggtcttgaattcgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaat 10745309  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    || ||||||||||| ||||||| ||||||||| ||||||||    
T  10745308 tatctttgtaagtgctctttgaacccgaaggtattccctgc 10745268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 238 - 341
Target Start/End: Complemental strand, 45137109 - 45137006
Alignment:
Q  238 cttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttcc 337  Q
    |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcc 45137010  T
Q  338 ctgc 341  Q
    ||||    
T  45137009 ctgc 45137006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 199 - 341
Target Start/End: Original strand, 26690108 - 26690250
Alignment:
Q  199 aaaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgta 298  Q
    |||||| ||||||||||||||||||||||||||||| || || ||| |||||||| | | |||||||  ||||| |||| ||||||||||||||||||||    
T  26690108 aaaactccaaaggcttggtctagtggtaaaaagacaggttttaaattcgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgta 26690207  T
Q  299 attacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||||||||||| |  ||||||||||||||||    
T  26690208 attacctttgtaagtgatctttgtgttcgaaggtcttccctgc 26690250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 7860322 - 7860193
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | ||| |||| ||||| |||||||||||||||||||||||||      
T  7860322 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgtaca 7860223  T
Q  301 tacctttgtaagtgatctttgagcccgaag 330  Q
    ||| |||||||||| |||||||||||||||    
T  7860222 tacatttgtaagtgttctttgagcccgaag 7860193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 201 - 337
Target Start/End: Complemental strand, 30372856 - 30372720
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||| |||||||||||||||||||| | ||||||||| ||||||| || | |||||||||||||| ||||||||||| ||||||||||||||     
T  30372856 aactccaaaggtttggtctagtggtaaaaagataggtcttgaattcgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgtaaa 30372757  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttcc 337  Q
    || |||||| |||| ||||||||||||||||||||||    
T  30372756 tatctttgttagtgctctttgagcccgaaggtcttcc 30372720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 217 - 341
Target Start/End: Original strand, 21637869 - 21637993
Alignment:
Q  217 tctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgat 316  Q
    ||||||||||||| || | ||||||||| |||||||||||| ||| |||| ||||| |||||||||||||||||||||||||| |||||||||||||| |    
T  21637869 tctagtggtaaaatgataggtcttgaattcgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttgtaagtgct 21637968  T
Q  317 ctttgagcccgaaggtcttccctgc 341  Q
    |||||||||| ||||||||| ||||    
T  21637969 ctttgagcccaaaggtcttctctgc 21637993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 2224523 - 2224436
Alignment:
Q  70 atggttataacaaactttgaaaaattatagatttaaaacattattgatagccacgagtattttatatgaaaaattgtggattaaaaaa 157  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2224523 atggatataacaaactttgaaaaattatagatttaaaatattattgatagccacgagtattttatatgaaaaattgtggatttaaaaa 2224436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 337
Target Start/End: Complemental strand, 2357251 - 2357116
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||| || || |||||||||||||||||||||||     
T  2357251 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgtaaa 2357152  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttcc 337  Q
    |||| |||||| || | ||||||  ||||||||||||    
T  2357151 taccattgtaaatgct-tttgagttcgaaggtcttcc 2357116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 341
Target Start/End: Original strand, 3200847 - 3200977
Alignment:
Q  210 ggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgt 309  Q
    |||||||||| ||||||||||||||  |||||||||  |||||||| |  |||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  3200847 ggcttggtct-gtggtaaaaagacagatcttgaatctaagagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttgt 3200945  T
Q  310 aagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||| |||||||||| |||| ||||| ||||    
T  3200946 aagtgttctttgagcctgaagatcttctctgc 3200977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 21487106 - 21487244
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||| || ||| |||||||||| |||| ||||||||||| |||  |||  |||| ||||||| |||||  ||||||||||||||||||||||     
T  21487106 aactccaaaggtttagtcaagtggtaaaatgacaggtcttgaatccaaga--acctaagtttgagctccactggtatctttggagggaggtaaatgtaaa 21487203  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||  |||||||||| |||||||||||||| |||||||||||    
T  21487204 tatttttgtaagtgctctttgagcccgaaagtcttccctgc 21487244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 558548 - 558477
Alignment:
Q  268 ccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||  |||||||||||||    
T  558548 ccgctagtgcctttggagggaggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttccct 558477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 13047318 - 13047192
Alignment:
Q  207 aaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctt 306  Q
    |||||||||||||   |||||||||||| ||||||||| |||||||| ||| |||||||| ||||   || |||||||||||||||||| |||||||||     
T  13047318 aaaggcttggtct---ggtaaaaagacaggtcttgaattcgagagaatccgggttcgagccccgc--atgtctttggagggaggtaaatataattacct- 13047225  T
Q  307 tgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
      |||||| ||||||||||| ||| ||||||||||    
T  13047224 --taagtgctctttgagcccaaagatcttccctgc 13047192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 2224039 - 2223989
Alignment:
Q  150 ttaaaaaatcattgttacatttctacatggaaacatattatccatttcaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2224039 ttaaaaaatcattgttacatttctacatggaaacatattatccatttcaaa 2223989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 33066582 - 33066681
Alignment:
Q  237 tcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttc 336  Q
    ||||||||  ||||||| ||| ||||||||| | || ||| |||||||| ||||||||||||| || ||||||||||| |||||||||| ||||||||||    
T  33066582 tcttgaatttgagagaatccgggttcgagcttcactagtgtctttggagagaggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttc 33066681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 2099017 - 2098939
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcc 278  Q
    ||||| ||||||||||||||| |||||||| || | ||||||||| |||||||||||  |||||| ||||||| |||||    
T  2099017 aaactccaaaggcttggtctattggtaaaatgataggtcttgaattcgagagaacccaggttcgaactccgctagtgcc 2098939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 336
Target Start/End: Complemental strand, 4553723 - 4553599
Alignment:
Q  213 ttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagg-gaggtaaatgtaattacctttgtaa 311  Q
    |||||||| ||||||||||||| ||||||||| |||||||   |  ||||||| || ||| |||  |||||||| ||||||||| ||| ||| |||||||    
T  4553723 ttggtctaatggtaaaaagacatgtcttgaattcgagagatttcaggttcgagttcagctagtgtttttggaggagaggtaaatataaatacatttgtaa 4553624  T
Q  312 gtgatctttgagcccgaaggtcttc 336  Q
    ||  |||||||| ||| ||||||||    
T  4553623 gtactctttgagtccggaggtcttc 4553599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 20961496 - 20961550
Alignment:
Q  260 ttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtg 314  Q
    ||||||||||||| ||||| |||||||||||||||||||| | | ||||||||||    
T  20961496 ttcgagctccgctagtgcccttggagggaggtaaatgtaaatccatttgtaagtg 20961550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 198 - 341
Target Start/End: Original strand, 19723264 - 19723407
Alignment:
Q  198 aaaaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgt 297  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  19723264 aaaaactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgt 19723363  T
Q  298 aattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||    
T  19723364 aattacctttgtaagtgctctttgagcccaaagatcttccctgc 19723407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 200 - 341
Target Start/End: Complemental strand, 32296816 - 32296675
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||  ||||||||||| |||| ||| | ||| ||||||||| ||||||||||||||||    
T  32296816 aaactccaaaggtttggtctagtggtaaaaagacaggtcttgaatttgagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaa 32296717  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  32296716 ttacctttgtaagtgctctttgagcccgaaggtcttccctgc 32296675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 4840096 - 4840236
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| ||    
T  4840096 aactccaaaggcttggtctagtggtaaaaagataggttttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcat 4840195  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||| ||||||||| |||||||| || ||||||||||||||    
T  4840196 taccattgtaagtgctctttgagtccaaaggtcttccctgc 4840236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 11403957 - 11404097
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||| |||||||||||||||||| |||| ||||||||| |||||||||| | ||||||||  |||| ||| ||||||||||||||||||||||     
T  11403957 aactccaaagacttggtctagtggtaaaatgacaggtcttgaattcgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaa 11404056  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11404057 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 11404097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 24475172 - 24475032
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| ||||||||||||||||| |||| | |||| ||||||||||||| ||||  ||| ||||||||||||| ||||||||||||||||||||||||||     
T  24475172 aactccaaaggcttggtctagtagtaagatgacaggtcttgaatccgatagaattcgaattcgagctccgctagtgcctttggagggaggtaaatgtaaa 24475073  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| |||||||||||||||||||| |||||    
T  24475072 tacctttgtaagtgttctttgagcccgaaggtctttcctgc 24475032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 337
Target Start/End: Original strand, 22711464 - 22711601
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||| || ||| |||  |  ||  |||||||||||||||||||||||||    
T  22711464 aaactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaa 22711563  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttcc 337  Q
     |||||||||||||| ||||||||||||||||||||||    
T  22711564 atacctttgtaagtgctctttgagcccgaaggtcttcc 22711601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 27881164 - 27881044
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||     
T  27881164 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaa 27881065  T
Q  301 tacctttgtaagtgatctttg 321  Q
    |||||||||||||| ||||||    
T  27881064 tacctttgtaagtgctctttg 27881044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 28021345 - 28021225
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||     
T  28021345 aactccaaaggcttggtctagtggtaaaatgacaggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaa 28021246  T
Q  301 tacctttgtaagtgatctttg 321  Q
    |||||||||||||| ||||||    
T  28021245 tacctttgtaagtgctctttg 28021225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 206 - 339
Target Start/End: Complemental strand, 28739732 - 28739599
Alignment:
Q  206 caaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacct 305  Q
    |||||||||||||||||||||||| |||| ||||||||| | |||||||| | |||| ||| || || ||||||||||||| | |||||||||| |||||    
T  28739732 caaaggcttggtctagtggtaaaatgacaggtcttgaattctagagaacctgggttcaagccccactagtgcctttggaggaaagtaaatgtaaatacct 28739633  T
Q  306 ttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    ||||||||| ||||||||||||||||||||||||    
T  28739632 ttgtaagtgctctttgagcccgaaggtcttccct 28739599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 29767169 - 29767282
Alignment:
Q  226 aaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcc 325  Q
    ||||||||| |||||||||| ||||||||||| | |||||| ||||| ||||||||| |||||||||||  |||||||||||||||||| ||||||||||    
T  29767169 aaaaagacaggtcttgaatctgagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaa--taattacctttgtaagtgttctttgagcc 29767266  T
Q  326 cgaaggtcttccctgc 341  Q
    ||||||||||||||||    
T  29767267 cgaaggtcttccctgc 29767282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 30682794 - 30682935
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| ||||||||||||||||||||| || | ||  |||||||| | ||||| |||| |||||||| || ||||||||||||||| ||| |||||||||    
T  30682794 aaactccaaaggcttggtctagtggtacaatggcagttcttgaattcaagagagcccgtgttcgagccccactggtgcctttggagagagataaatgtaa 30682893  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
     ||| |||||||||| ||||||||||||||| ||||||||||    
T  30682894 atacttttgtaagtgttctttgagcccgaagatcttccctgc 30682935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 201 - 335
Target Start/End: Original strand, 11610236 - 11610370
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||| | ||  |||||||  |||| ||||||||||||  |||||||| |||     
T  11610236 aactccaaaggtttggtctagtggtaaaaagacaggtcttgaatccgagagatctcggattcgagcctcgctagtgcctttggagaaaggtaaatataaa 11610335  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtctt 335  Q
    || ||||||||||| | ||| ||||||||||||||    
T  11610336 tatctttgtaagtgctgtttaagcccgaaggtctt 11610370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 17095568 - 17095646
Alignment:
Q  263 gagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  17095568 gagccccgctagtgcctttggagggaggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgc 17095646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 41553261 - 41553381
Alignment:
Q  221 gtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatcttt 320  Q
    ||||||||| || | ||||||||| ||||||||||||||||||||  || ||  || ||||||||| | |||||||||| |||||||||||||| |||||    
T  41553261 gtggtaaaatgataggtcttgaattcgagagaacccgagttcgagtcccactaatgtctttggaggaacgtaaatgtaaatacctttgtaagtgttcttt 41553360  T
Q  321 gagcccgaaggtcttccctgc 341  Q
    |||| ||||||||||||||||    
T  41553361 gagctcgaaggtcttccctgc 41553381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 21355087 - 21355020
Alignment:
Q  274 gtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  21355087 gtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgc 21355020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 36261679 - 36261742
Alignment:
Q  278 ctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  36261679 ctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgc 36261742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 43288105 - 43288168
Alignment:
Q  278 ctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||    
T  43288105 ctttggagggaggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgc 43288168  T

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Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 6097525 - 6097591
Alignment:
Q  206 caaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgct 272  Q
    |||| |||||||||  ||||||||||||| ||||||||| |||||||| |||||||||||| |||||    
T  6097525 caaaagcttggtcttatggtaaaaagacaggtcttgaattcgagagaatccgagttcgagccccgct 6097591  T

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Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 11909509 - 11909459
Alignment:
Q  291 taaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||||||| ||||||| |||||| ||||||||| ||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgc 11909459  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 201 - 341
Target Start/End: Complemental strand, 35163926 - 35163786
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || ||  |||||||||||||||||||||||||     
T  35163926 aacttcaaaggcttggtctagtggtaaaaagacaggtcttgaatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaa 35163827  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  35163826 tacctttgtaagtgctctttgagcccgaaggtcttccctgc 35163786  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 2711904 - 2711770
Alignment:
Q  207 aaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctt 306  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||| |  ||||||| || || |||| ||||||||||||||||||||| ||||||    
T  2711904 aaaggcttggtctagtggtaaaatgacaggtcttgaatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctt 2711805  T
Q  307 tgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||| ||||||||| ||||||||||||||||    
T  2711804 tgtaagtgctctttgagctcgaaggtcttccctgc 2711770  T

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Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 19686997 - 19686869
Alignment:
Q  207 aaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctt 306  Q
    ||||| |||||||||||||||||| ||| |||||||||| ||||||||| | |||||||| || || ||||||||| |||||||||||||||||||||||    
T  19686997 aaaggtttggtctagtggtaaaaaaacaggtcttgaatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaattacctt 19686898  T
Q  307 tgtaagtgatctttgagcccgaaggtctt 335  Q
    |||||||| ||||||||||||||| ||||    
T  19686897 tgtaagtgctctttgagcccgaagatctt 19686869  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 14496313 - 14496406
Alignment:
Q  206 caaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||    
T  14496313 caaaggtttggtctagtggtaaaaagaaaggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaa 14496406  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 20685348 - 20685421
Alignment:
Q  268 ccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20685348 ccgctagtgcctttggagggaggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgc 20685421  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 337
Target Start/End: Complemental strand, 14505698 - 14505564
Alignment:
Q  201 aacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaat 300  Q
    |||| |||||||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||||| ||||| |||| |||||||||||||||||||||     
T  14505698 aactccaaaggcttggtctagaggtaaaaaaacaagt-ttgaatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgtaa- 14505601  T
Q  301 tacctttgtaagtgatctttgagcccgaaggtcttcc 337  Q
    ||||||||||| |  |||||| || ||||| ||||||    
T  14505600 tacctttgtaaatattctttgggcgcgaagatcttcc 14505564  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 17948703 - 17948775
Alignment:
Q  268 ccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctg 340  Q
    ||||| ||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  17948703 ccgctagtgtctttggagagaggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctg 17948775  T

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Target: chr6; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 15070154 - 15070221
Alignment:
Q  274 gtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||    
T  15070154 gtgcctttggagggaggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgc 15070221  T

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Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 24336633 - 24336711
Alignment:
Q  263 gagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    |||||| ||| || ||||||||||||||||||||||| ||| |||||||||| | |||||||| |||| ||||||||||    
T  24336633 gagctctgctagtccctttggagggaggtaaatgtaaatacttttgtaagtgttttttgagcctgaagatcttccctgc 24336711  T

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Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 200 - 341
Target Start/End: Original strand, 17064278 - 17064419
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||||||||    
T  17064278 aaactccaaaggcttggtctagtggtaaaatgacaggtcttgaatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaa 17064377  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
     |||||||||||||| ||||| ||||||||||||||||||||    
T  17064378 atacctttgtaagtgctctttaagcccgaaggtcttccctgc 17064419  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 199 - 341
Target Start/End: Complemental strand, 20983181 - 20983039
Alignment:
Q  199 aaaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgta 298  Q
    |||||| |||||||||||||||||| |||||||||| ||||||||||| |||||| ||| |||||||| ||||| ||||||| |||| |||||||||| |    
T  20983181 aaaactccaaaggcttggtctagtgataaaaagacaggtcttgaatccaagagaatccgggttcgagccccgctagtgccttcggagagaggtaaatgca 20983082  T
Q  299 attacctttgtaagtgatctttgagcccgaaggtcttccctgc 341  Q
    ||||| |||||||||| |||||||||||||| |||||||||||    
T  20983081 attacatttgtaagtgctctttgagcccgaaagtcttccctgc 20983039  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 37976530 - 37976646
Alignment:
Q  229 aagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggta----aatgtaattacctttgtaagtgatctttgagc 324  Q
    |||||| |||||||||||||||||||| | |||||||| ||||| |||| |||| |||||||||    ||||||| |||||||||||||| | |||||||    
T  37976530 aagacaggtcttgaatccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaattaatgtaaatacctttgtaagtgctatttgagc 37976629  T
Q  325 ccgaaggtcttccctgc 341  Q
    |||||||| || |||||    
T  37976630 ccgaaggtttttcctgc 37976646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 35237193 - 35237103
Alignment:
Q  207 aaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgt 297  Q
    ||||||||||||||||||||||| || | ||||||||| |||||||| | |  ||||||| ||||| ||| ||||| ||||||||||||||    
T  35237193 aaaggcttggtctagtggtaaaatgatacgtcttgaattcgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 341
Target Start/End: Original strand, 41910793 - 41910920
Alignment:
Q  212 cttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaattacctttgtaa 311  Q
    |||| |||||||||||||||||| |||||||||| |||||||   | ||| ||| |  | | ||  ||||||||| ||||||||||||||| ||||||||    
T  41910793 cttgctctagtggtaaaaagacaggtcttgaatctgagagaatttgggtttgagttt-gttagtatctttggagg-aggtaaatgtaattaactttgtaa 41910890  T
Q  312 gtgatctttgagcccgaaggtcttccctgc 341  Q
    ||| |||||||||||||| |||||| ||||    
T  41910891 gtgttctttgagcccgaatgtcttctctgc 41910920  T

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Target: scaffold0691 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 7142 - 7007
Alignment:
Q  200 aaacttcaaaggcttggtctagtggtaaaaagacaagtcttgaatccgagagaacccgagttcgagctccgctggtgcctttggagggaggtaaatgtaa 299  Q
    ||||| |||||||||| | |||||||||||||||| | || |||   ||||||| ||| |||||||  ||||| |||| |||||||||| ||||||||||    
T  7142 aaactccaaaggcttgtt-tagtggtaaaaagacaggactcgaa---gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaa 7047  T
Q  300 ttacctttgtaagtgatctttgagcccgaaggtcttccct 339  Q
    ||||||||| ||||| |||||||| |||||||||||||||    
T  7046 ttacctttgcaagtgttctttgagtccgaaggtcttccct 7007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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