View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1620_low_2 (Length: 333)
Name: NF1620_low_2
Description: NF1620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1620_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 3297414 - 3297717
Alignment:
| Q |
24 |
tcacacacacatgtgtttgaaaaatgagaaacatgaaatttgaagtcatgagcatctaccacttcaaatgtctatgcaacaaccgtttgaaatgtattta |
123 |
Q |
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| T |
3297414 |
tcacacacacatgtgtttgaaaaatgagaaacatgaaattcgaaatcatgagcatctaccacttcaaatgtctatgcaactacggtttgaaatgtattta |
3297513 |
T |
|
| Q |
124 |
taaaatttctatcattcttaaatctatccttttcaatttggaaactaacatttttattttaataattttatatcagatgtacaagataagtaaataagtt |
223 |
Q |
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| T |
3297514 |
tgaaatttctatcattcttaaatctatcattttcaatttggaaactaacatttctattttaataatttcatatcagatgtacaagataagtaaataagtt |
3297613 |
T |
|
| Q |
224 |
acaaccnnnnnnnnnnnnnngataagtaaataagttaattgatgttgatgcatcaaaactggattgtttaaaggaacactattacactaatgccttcatc |
323 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
3297614 |
acaatcaaaaaaggaaaaaagataagtaaataagttaattgatgttgatgcatcaaaactggattgtttaaaggaacactattacactaatgcctacttc |
3297713 |
T |
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| Q |
324 |
tcac |
327 |
Q |
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|||| |
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| T |
3297714 |
tcac |
3297717 |
T |
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