View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1620_low_3 (Length: 244)
Name: NF1620_low_3
Description: NF1620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1620_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 19972245 - 19972432
Alignment:
| Q |
39 |
atattagagctagtaaacgttttttcttaaaacatggttgatcaaagcatgaagaaattataataagaagcttcagttaccaacattagagcagacatat |
138 |
Q |
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| T |
19972245 |
atattagagctagtaaatgcgttttctcaaaacatggttgatcaaagcatgaagaaattataataag---cttcagttaccaacattaaagcagacatat |
19972341 |
T |
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| Q |
139 |
ccaatcagaaaataactatcagagtaatagatttaatcatcagagcaaatatt--caaaccaatatattccttagacgatagagcactaag |
227 |
Q |
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| T |
19972342 |
ccaatcacaaaataactatcagagtaacggatttaatcatcagagcaaatatttaaaaaccaatatattcattagacgatagagccctaag |
19972432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 17129912 - 17129956
Alignment:
| Q |
183 |
gcaaatattcaaaccaatatattccttagacgatagagcactaag |
227 |
Q |
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| T |
17129912 |
gcaaatattcaaaccaatatattcattagacgatagagcactaag |
17129956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 17165496 - 17165540
Alignment:
| Q |
183 |
gcaaatattcaaaccaatatattccttagacgatagagcactaag |
227 |
Q |
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| T |
17165496 |
gcaaatattcaaaccaatatattcattagacgatagagcactaag |
17165540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19972174 - 19972224
Alignment:
| Q |
1 |
tttctttttatgcttaggaatgaagtgaaaaactatcaatattagagctagta |
53 |
Q |
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| T |
19972174 |
tttctttttatgcttgggaatgaagtg--atgctatcaatattagagctagta |
19972224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4286868 - 4287013
Alignment:
| Q |
1 |
tttctttttatgcttaggaatgaagtgaaaaactatcaatattagagctagtaaacgttttttcttaaaacatggttgatcaaagcatgaagaaattata |
100 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
4286868 |
tttctttttatgcttaggaatgaaagcacg--ctatcaatattagaactagtaaacacattttcttaaaacatgattgatgaaagcatgaagaaagtata |
4286965 |
T |
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| Q |
101 |
------ataagaagcttcagttaccaacattagagcagacatatccaa |
142 |
Q |
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| T |
4286966 |
tatattataagaagcttcaattacaaactttagagcaaacatatccaa |
4287013 |
T |
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