View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16210_high_1 (Length: 613)
Name: NF16210_high_1
Description: NF16210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16210_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 17 - 607
Target Start/End: Complemental strand, 43002428 - 43001839
Alignment:
| Q |
17 |
caccactgtaccaagtacacccctaacatgacaatactctaccttccctattccaaataaaatggctactaatagaataccaaagaaaacaaacatatgc |
116 |
Q |
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| T |
43002428 |
caccactgtaccaagtacacccctaacatgacaatactctaccttccccattccaaataaaatggctactaatagaataccaaagaaaacaaacat--gc |
43002331 |
T |
|
| Q |
117 |
caaaaccaagaaactgtcatgacaggaacaaaacaagtgcagtactctaccttccccattccacataaagtatcatttaaatctccttaaaacattgata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43002330 |
caaaaccaagaaactgtcatgacaggaacaaaacaagtgcagtactctaccttccccattccacataaagtatcatttaaatctccttaaaacattggta |
43002231 |
T |
|
| Q |
217 |
tgcactactatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatataattcaagctata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43002230 |
tgcactactatacacacttttattatggcatgtaacctcaattattcaacactcaccctctcatttaccaactatatatgtatatataattcaaggtata |
43002131 |
T |
|
| Q |
316 |
ccgtgtgacacattgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctc |
415 |
Q |
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| T |
43002130 |
ccgtgtgacacattgcacaagcctctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctc |
43002031 |
T |
|
| Q |
416 |
tccctctttctcacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatcaatat |
515 |
Q |
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| T |
43002030 |
tccctctttctcacattcctttctttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatccatat |
43001931 |
T |
|
| Q |
516 |
ttgtttgcttcacaaaacttgaactagtaatcaactcattcacactagtatttccatacgatgtcgcaactaatgatccactcctttgcttc |
607 |
Q |
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| T |
43001930 |
ttgttagcttcacaaaacttgaactagtaatcaactcattcacactagtatttctatacgatgtcgcaactaatgatccactcctttgcttc |
43001839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 241 - 607
Target Start/End: Complemental strand, 5512549 - 5512182
Alignment:
| Q |
241 |
atggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatataattcaagctataccgtgtgacacattgcacaagcct |
339 |
Q |
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| T |
5512549 |
atggcatgtaacctcaattattcaacattcacactttcacttaccaactatatatctatatataattcaaggtatacggtgtgacacattgcacagacct |
5512450 |
T |
|
| Q |
340 |
ctaaaactttattgtttcacacaatattcatgtataatgcctctaaaactggtatgatgttccaagtctttgtctctccctctttctcacattcctttct |
439 |
Q |
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| T |
5512449 |
ttaaaagtttattgtttcacacaatattcatttataatgcctctaaaactggcatgatgttccaagtctttgtctctgcctctttcccaaattcctttct |
5512350 |
T |
|
| Q |
440 |
ttgcaattaacagaagctaggaccaataacctttgaaaattctaaagaaactaattccatttctcttcatcaatatttgtttgcttcacaaaacttgaac |
539 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
5512349 |
ttgcaattaacaaaagctgggaccaataacctttgaaaattctcaagaaactggttccatttctcttcatccatatctgtcagcttcacaaaacttgaac |
5512250 |
T |
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| Q |
540 |
tagtaatcaactcattcacactagtatttccatacgatgtcgcaactaatgatccactcctttgcttc |
607 |
Q |
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|||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |
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| T |
5512249 |
tagtaatcaactcattcacactagtatttccagatgatgtcccaactaatgatccactcctttgcttc |
5512182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 2773092 - 2773190
Alignment:
| Q |
225 |
tatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
320 |
Q |
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||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
2773092 |
tatacacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 225 - 320
Target Start/End: Original strand, 2773265 - 2773363
Alignment:
| Q |
225 |
tatacacacttttattatggcatgtaacc-caattgttcaacactcatcctctcatttaccaactatatatgtatatat--aattcaagctataccgtg |
320 |
Q |
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||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
2773265 |
tatacacacttttgttatggcatgtaacctcaattattcaacactcaccctctcatttaccagctatatatgtatatatacaattcaagctgtaccgtg |
2773363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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