View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16210_high_2 (Length: 429)
Name: NF16210_high_2
Description: NF16210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16210_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 7664796 - 7665199
Alignment:
| Q |
19 |
ccgattactttggctaattttcagtttaaaattgttactaaaattttagctgacatgttagctcatattaccatgcagattgtttcggttaatcaacgag |
118 |
Q |
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| T |
7664796 |
ccgattactttggcaaattttcagtttaaaattgttactaaaattttagctgacatgttagctcatattgccatgcagaatgtttcggttaatcaacgag |
7664895 |
T |
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| Q |
119 |
gttttattcgagatcgacaaattttttagtgtgtgattattgcttctgaagccatcaaccttttagatcgtaaatgctttggaggtaatttggcctcaaa |
218 |
Q |
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| T |
7664896 |
gttttcttcgagatcgacaaattttttagtgtgtgattattgcttctaaagccatcaaccttttagatcgtaaatgctttggaggtaatttggcctcaaa |
7664995 |
T |
|
| Q |
219 |
agttgatattaaaaaggcttttgacactttagattgaaattttcttcgtcttgtgcttcaacagtttggacttcatttgaggtttattaattggattatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664996 |
agttgatattaaaaaggcttttgacactttagattgaaattttcttcgtcttgtgcttcaacagtttggacttcatttgaggtttattaattggattatg |
7665095 |
T |
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| Q |
319 |
gaaattcttcactctgcccgtatatctattttggtgaatggcaaagccatttgttttttccttgctcccatggagttcgacagggtgacccgctctcccc |
418 |
Q |
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| T |
7665096 |
gaaattcttcactctgcccgtatatctattttggtgaatggcaaagccatttgttttttccttgctcccatggagttcgacagggtgacccgctctcccc |
7665195 |
T |
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| Q |
419 |
tttg |
422 |
Q |
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|||| |
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| T |
7665196 |
tttg |
7665199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 41248246 - 41248207
Alignment:
| Q |
34 |
aattttcagtttaaaattgttactaaaattttagctgaca |
73 |
Q |
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| T |
41248246 |
aattttcaatttaaaattgttacgaaaattttagctgaca |
41248207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 20382689 - 20382726
Alignment:
| Q |
36 |
ttttcagtttaaaattgttactaaaattttagctgaca |
73 |
Q |
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| T |
20382689 |
ttttcagtttaaaattgttactaaaactttagcagaca |
20382726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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