View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16210_low_3 (Length: 300)
Name: NF16210_low_3
Description: NF16210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16210_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 3586708 - 3586996
Alignment:
| Q |
1 |
cccttggtagataagacttgcattgaactttgacagattaagctgggtttcttagaagtttaaatttaaatatcttgttccagcaaagtttcactacatg |
100 |
Q |
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| T |
3586708 |
cccttggtagacaagacttgcattgaactttgacagattacgctgggtttcttagaagtttaaatttaaatatcttgttccagcaaagtttcactacatg |
3586807 |
T |
|
| Q |
101 |
tagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatgcggtacttttggtactccatttttattcattttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3586808 |
tagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatacggtacttttggtactccatttttattcattttct |
3586907 |
T |
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| Q |
201 |
attgtgagtgaaaattgtgggttctcttgtatatggtcaccgaaagggccggcaccactaataaggtcagtacttttcgagctgctgcc |
289 |
Q |
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| T |
3586908 |
attgtgagtgaaaattgtgggttctcttgtaaatggtcaccgaaagggccggcaccactaataaggtcagtacttttcgagctgctgcc |
3586996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 3574501 - 3574547
Alignment:
| Q |
188 |
ttattcattttctattgtgagtgaaaattgtgggttctcttgtatat |
234 |
Q |
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| T |
3574501 |
ttattcattttttattgtgagtgaaaatcgtgggttctcttgtatat |
3574547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 21979138 - 21979083
Alignment:
| Q |
166 |
cggtacttttggtactccatttttattcatt-ttctattgtgagtgaaaattgtgg |
220 |
Q |
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| T |
21979138 |
cggtacttttggtactccatttttgctcattattctattgtgagtggaaaatgtgg |
21979083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 10506547 - 10506505
Alignment:
| Q |
73 |
tcttgttccagcaaagtttcactacatgtagttgaagtttcaa |
115 |
Q |
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| T |
10506547 |
tcttgttcaagcaaagtttcactacatattgttgaagtttcaa |
10506505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 28080376 - 28080420
Alignment:
| Q |
176 |
ggtactccatttttattcatt-ttctattgtgagtgaaaattgtg |
219 |
Q |
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|||||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
28080376 |
ggtacttcatttttgttcattattctattgtgagtgaaaattgtg |
28080420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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