View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16211_high_2 (Length: 329)
Name: NF16211_high_2
Description: NF16211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16211_high_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 329
Target Start/End: Complemental strand, 21266091 - 21265767
Alignment:
| Q |
4 |
aaatgctcaatgattgactatagggttaattttaccnnnnnnngtttttctcatgacttcaccagagaattttccatctttgttgctgacatacatgaac |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21266091 |
aaatgctcaatgattgactatagggttaattttaccagaaaa-gtcattatcatgagttcaccagagaactttccatctttgttgctgacatacatgaac |
21265993 |
T |
|
| Q |
104 |
gaggtcgcttttcaatttaattcattcaagctagatatgtgtttacaaaactgtttttctttaacttttcttgtcctcctcatctaaaggtttcacaata |
203 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21265992 |
ggggtcgcttttcaatttaattcattcaagctagatatgtgtttacaaaactgtttttctttaacttttcttgtcctcctcatctaaaggtttcacaata |
21265893 |
T |
|
| Q |
204 |
gcatcacattgtccttcaaaatcctcattaaagcacgtaagcaattagtctcttgtagattttaaaggttatcccagtttctaagcctggtacccgtgat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21265892 |
gcatcacattgtccttcaaaatcctcattaaagcacgtaagcacctagtctcttgtagattttaaaggttatcccagtttctaagcctggtacccgtgat |
21265793 |
T |
|
| Q |
304 |
gatactagatgctgggcagcttctac |
329 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
21265792 |
gatactagatgttgggcagcttctac |
21265767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 28003170 - 28003204
Alignment:
| Q |
51 |
ttctcatgacttcaccagagaattttccatctttg |
85 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28003170 |
ttctcatgacttcaccatagaattttccatctttg |
28003204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University