View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16211_low_1 (Length: 473)
Name: NF16211_low_1
Description: NF16211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16211_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Complemental strand, 13299820 - 13299375
Alignment:
| Q |
9 |
agcagagatctataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcatccaatacctttctgcttataaaactttc |
108 |
Q |
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| T |
13299820 |
agcagtgatctataatattatttaaatcaacatagatattctaatctaactaagcaccttcttccctttcacccaatacctttctgcttataaaactttc |
13299721 |
T |
|
| Q |
109 |
tctttgcatcttacaactca--aaatggaaactcttcttcctgcaccaacaatcactctcactcatctttaatcaatattaaccaagtaagattcttaag |
206 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299720 |
tctt-gcatcttacaactcacaaaatggaaactcttcttcctgcaccatcaatcaccctcactcatctttaatcaatattaaccaagtaagattcttaag |
13299622 |
T |
|
| Q |
207 |
cttgtgttttattttcannnnnnnnnnctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaac |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13299621 |
cttgtgttttattttcatttttttt--ctatttatacataaagtcaaagaaattatctaactgtttaattaacaaaccctagctagggacataaattaac |
13299524 |
T |
|
| Q |
307 |
taaggtgaaaattaagaatgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggatt |
406 |
Q |
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| T |
13299523 |
taaggtgaaaattaagaatgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggatt |
13299424 |
T |
|
| Q |
407 |
gatcaagaaagccaaagaattagcaatcctatgtgatgcacaagttgga |
455 |
Q |
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| T |
13299423 |
gatcaagaaagccaaagaattagcaatcctatgtgatgcacaagttgga |
13299375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 456
Target Start/End: Complemental strand, 36925793 - 36925661
Alignment:
| Q |
324 |
atgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaag |
423 |
Q |
| |
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||||||||||| |||||||||||||||||||| || || | |||||| | |||||||||||||||||||| ||||| || ||||| |||||||| |||| |
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| T |
36925793 |
atgggaagaggaaagattgtgattcgaaggattgagaatttgacaagccgtcaagtgactttctcaaagagaagaaaagggttgatgaagaaagctaaag |
36925694 |
T |
|
| Q |
424 |
aattagcaatcctatgtgatgcacaagttggat |
456 |
Q |
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|| || | || || ||||||||||||||||||| |
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| T |
36925693 |
aactatccattctttgtgatgcacaagttggat |
36925661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 324 - 456
Target Start/End: Original strand, 2115220 - 2115352
Alignment:
| Q |
324 |
atgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaag |
423 |
Q |
| |
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||||||||||| ||||||| ||| ||||||| ||||| | |||||||||||||||||||||||||| || ||||| |||||| | |||||||| |||| |
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| T |
2115220 |
atgggaagaggaaagattgcaattagaaggattgacaattcaacaagcaggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagcaaaag |
2115319 |
T |
|
| Q |
424 |
aattagcaatcctatgtgatgcacaagttggat |
456 |
Q |
| |
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||||| | || || |||||||| ||||||||| |
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|
| T |
2115320 |
aattatccattctttgtgatgctgaagttggat |
2115352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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