View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16212_high_3 (Length: 319)
Name: NF16212_high_3
Description: NF16212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16212_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 2060273 - 2060568
Alignment:
| Q |
17 |
caagtttgacctttctgcagtttcaactgggtagtagttgacatcaattattttattaaggttggttgtcaccacagcagtaacctctcctagtttttca |
116 |
Q |
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| T |
2060273 |
caagtttgacctttctgcagtttcaactgggtagttgttgacatcaattattttattaaggttggttgtcaccacagcagtaacctctcctagtttttca |
2060372 |
T |
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| Q |
117 |
aagtcaaaataccgactgctagagcctctgctcccaacaagcttagactgatgagactccacaggcaaacccttatctcttacaaaacgcggtagtgcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2060373 |
aagtcaaaataccgactgctagagcctctgctcccaacaagcttagactgatgagactccacaggcaaacccttatctcttacaaaacgcggtagtgcaa |
2060472 |
T |
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| Q |
217 |
ttgatgcaaggttacacacagcagtctctgttggacttgtatactggattatctcagtgcacagatttgatgacttaattgtgcacaggttctgct |
312 |
Q |
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| T |
2060473 |
ttgatgcaaggttacacacagcagtctctgttggacttgtatactggattatctcagtgcacagatttgatgacttaattgtgcccagattctgct |
2060568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 38672487 - 38672612
Alignment:
| Q |
187 |
ccttatctcttacaaaacgcggtagtgcaattgatgcaaggttacacacagcagtctctgttggacttgtatactggattatctcagtgcacagatttga |
286 |
Q |
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|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38672487 |
ccttatctcttacataacgtggtagggcaattgatgcaaggttacacacagcagtctctgttggacttgtatactcgattatctcagtgcacagatttga |
38672586 |
T |
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| Q |
287 |
tgacttaattgtgcacaggttctgct |
312 |
Q |
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| T |
38672587 |
tgacttaattgtgcccagattctgct |
38672612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 38672300 - 38672390
Alignment:
| Q |
99 |
acctctcctagtttttcaaagtcaaaataccgactgctagagcctctgctcccaacaagcttagactgatgagactccacaggcaaaccct |
189 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38672300 |
acctctcctagtttttcaaagtcaaaataccgactactagagcctctgctcccaacaagcttagactgatgagactccacaggcaaaccct |
38672390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 38672089 - 38672174
Alignment:
| Q |
17 |
caagtttgacctttctgcagtttcaactgggtagtagttgacatcaattattttattaaggttggttgtcaccacagcagtaacct |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38672089 |
caagtttgacctttctgcagtttcaactgggtagtagttgacatcaattattttattaaggttggttgtcaccacagcagtaacct |
38672174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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