View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16212_high_5 (Length: 247)
Name: NF16212_high_5
Description: NF16212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16212_high_5 |
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| [»] scaffold0209 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0209 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9657 - 9903
Alignment:
| Q |
1 |
aatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaat |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9657 |
aatatagggctcgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaat |
9756 |
T |
|
| Q |
101 |
ttagctttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgtgaactttct |
197 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9757 |
ttagctttgaaacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgtgaactttct |
9856 |
T |
|
| Q |
198 |
gaaagcttatgccaacttgtttaagctttgttgcagtcctttgcttc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9857 |
gaaagcttatgccaacttgtttaagctttgttgcagtccttggcttc |
9903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 23111 - 23357
Alignment:
| Q |
1 |
aatatagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaat |
100 |
Q |
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| T |
23111 |
aatatagggctcgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaat |
23210 |
T |
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| Q |
101 |
ttagctttgaaacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgtgaactttct |
197 |
Q |
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| T |
23211 |
ttagctttgaaacatggtaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagtaagcatcggttgtgaactttct |
23310 |
T |
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| Q |
198 |
gaaagcttatgccaacttgtttaagctttgttgcagtcctttgcttc |
244 |
Q |
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| T |
23311 |
gaaagcttatgccaacttgtttaagctttgttgcagtccttggcttc |
23357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 178515 - 178285
Alignment:
| Q |
20 |
tagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttga--------- |
110 |
Q |
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|||||||||||||| |||| || ||||| |||||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||||| | |
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| T |
178515 |
tagtgacattgctcgtaagcgattaggtttctaagaacacattcagttgtatggtctacttttaactgtgggaactgaaatctagctttaacacacttgc |
178416 |
T |
|
| Q |
111 |
aacatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaagta---atcggttgtgaactttctgaaagcttat |
207 |
Q |
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| T |
178415 |
aacatggtaaacaacctaaacataaaaaccaactcaacaaagggtttttctcaaacttaatgtcaagtaaggatctgttatgaaccttctcaaagcttat |
178316 |
T |
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| Q |
208 |
gccaacttgtttaagctttgttgcagtcctt |
238 |
Q |
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||| ||| || | |||||||||| ||||| |
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| T |
178315 |
accagcttcattcaactttgttgcactcctt |
178285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 115272 - 115505
Alignment:
| Q |
17 |
ggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttagctttgaa----- |
111 |
Q |
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||||||||||| ||||||||||| | | |||||| | |||||||||||| | ||| || ||||| || || |||||||||||| |||||||||| |
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| T |
115272 |
ggatagtgacactgctcaaaagcaactatgttcctcaaaacacattcggtcgcatgatctacttttaactgtgggaatagaaatctagctttgaagcact |
115371 |
T |
|
| Q |
112 |
----acatgttaaacaacctaaacaaagaaaccaactgaaaaagggctttttctgaaatttaatgtcaag---taatcggttgtgaactttctgaaagct |
204 |
Q |
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||| | ||||||||||||||||||||||||||| || || || ||||||| ||| || |||||||| | ||| ||| ||||| |||| |||||| |
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| T |
115372 |
tgcaacacggtaaacaacctaaacaaagaaaccaactcaacaaaggttttttctcaaactttatgtcaagcaatgatctgttatgaaccttctcaaagct |
115471 |
T |
|
| Q |
205 |
tatgccaacttgtttaagctttgttgcagtcctt |
238 |
Q |
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||| ||| ||| || | |||||||||||||||| |
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| T |
115472 |
tataccagcttcattcaactttgttgcagtcctt |
115505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 607205 - 607094
Alignment:
| Q |
5 |
tagggcttgtctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagggaatagaaatttag |
104 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||| || || |||||||||| | ||| |||| |||| ||||| ||||| ||||| |||||| ||| |
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| T |
607205 |
tagggcttgtctggataatgacactgctcaaaagcaattagattcctaagaatgctttctgttgagtggtttacttttaattgtgggaacagaaatctag |
607106 |
T |
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| Q |
105 |
ctttgaaacatg |
116 |
Q |
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||||||| |||| |
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| T |
607105 |
ctttgaagcatg |
607094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 106551 - 106618
Alignment:
| Q |
23 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaattgagg |
90 |
Q |
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|||||||| || ||||| ||||||||||||||||||||||| ||||| |||| ||||| |||||||| |
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| T |
106551 |
tgacattgttccaaagcaatgaggttcctaagaacacattcagttgtttggtgtactttgaattgagg |
106618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 143299 - 143245
Alignment:
| Q |
14 |
tctggatagtgacattgctcaaaagccatgaggttcctaagaacacattcggttg |
68 |
Q |
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|||| |||||||||||| ||||| || || |||||||||||||||||||| |||| |
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| T |
143299 |
tctgaatagtgacattgttcaaatgcgattaggttcctaagaacacattctgttg |
143245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 298674 - 298613
Alignment:
| Q |
23 |
tgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaa |
84 |
Q |
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|||||||| ||||| || ||||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
298674 |
tgacattgttcaaacgcgatgaggttcctaagaacacattcagttgcttggtctactttcaa |
298613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 45958368 - 45958433
Alignment:
| Q |
19 |
atagtgacattgctcaaaagccatgaggttcctaagaacacattcggttgtatggtccactttcaa |
84 |
Q |
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|||||||||||| ||| | || |||||||||||||||||||||| |||| ||||| |||||||| |
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| T |
45958368 |
atagtgacattgttcacacgcgatgaggttcctaagaacacattatgttgcttggtctactttcaa |
45958433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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