View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16212_low_1 (Length: 559)
Name: NF16212_low_1
Description: NF16212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16212_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Complemental strand, 28018609 - 28018087
Alignment:
| Q |
14 |
ctaacaacaacatacaaatgatttggcatttgtaattcacataattactcagtaaaaacactaaatnnnnnnngttcagtcaatatgttcctgcccgagc |
113 |
Q |
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| T |
28018609 |
ctaacaacaacgtacaaatgatttggcatttgtaattcacataattactcagtaaaaacactaaataaaaaaagttcagtcaatatgttcctgcccgagc |
28018510 |
T |
|
| Q |
114 |
cgaggcccaacccaacatatgttctcagaagctctttgtacaacgccc-ataagaaccttgatgggcgtcacgcaagaccacatgggaataataaccttt |
212 |
Q |
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| T |
28018509 |
cgaggcccaacccaacatatgttctcagaagctctttatacaatgccccataagaaccctgatgggcgtcacgcaggaccacatgggaataataaccttt |
28018410 |
T |
|
| Q |
213 |
ggaagcaatatgaaccatttagtctggattcaaggccatcctaacttgatttgtgcacggttgtatgaggactacaactgttaaagtaaaggttcatgga |
312 |
Q |
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| T |
28018409 |
ggaagcaatatgaaccatttagtctggattcaaggccatgctaacttgatttgtgcacagttgtatgaggactacaactcttaaagtaaaggttcatgga |
28018310 |
T |
|
| Q |
313 |
ccaaaatcttaaacatactttaaatactaactcataga-----aattgggtcatgtacattcactcttaccctaaaaaataactatcattacacgacatt |
407 |
Q |
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| T |
28018309 |
ccaaaatcttaaacatactttaaatactaactcatagacattggattgggtcatgtacattcactcttaccct-aaaaataactatcattacatgacact |
28018211 |
T |
|
| Q |
408 |
tactaacttgatcgtcgacgtgtgtcctaatacaccactcgcattcgtcctgctaagaagcttgttgctgacgatataacgctcaccaaagccattcaac |
507 |
Q |
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| T |
28018210 |
tactaacttgatcgtcgacgtgtggcctaatacaccacccacatttgtcctgctaagaagcctgttgccgatgatataatgctcaccaaagccattcaac |
28018111 |
T |
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| Q |
508 |
atcaacaacccataatctcaagtc |
531 |
Q |
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| T |
28018110 |
atcaacaacccataatctcaagtc |
28018087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Original strand, 25692019 - 25692065
Alignment:
| Q |
119 |
cccaacccaacatatgttctcagaagctctttgtacaacgcccataa |
165 |
Q |
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| T |
25692019 |
cccaacccaacatatgttctaagaggctctttgtacaaggcccataa |
25692065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Complemental strand, 41808904 - 41808853
Alignment:
| Q |
333 |
taaatactaactcatagaaattgggtcatgtacattcactcttaccctaaaa |
384 |
Q |
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| T |
41808904 |
taaatactaactcatggacattgagtcatgtactttcacttttaccctaaaa |
41808853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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