View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16212_low_2 (Length: 455)
Name: NF16212_low_2
Description: NF16212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16212_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 2136178 - 2136605
Alignment:
| Q |
19 |
ggtactccttgttctgataaacaagcagctactgctatacctgaaggaccagcacctactatgataggtccatgaatccatacacactttactttttctt |
118 |
Q |
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| T |
2136178 |
ggtactccttgctctgataaacaagcagctactgctatacctgaaggaccagcacctactatgataggtccatgaatccatacacactttactttttctt |
2136277 |
T |
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| Q |
119 |
tgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagnnnnnnnnnnnnnnngtgttatgtgtgtgaatgatgataaagt |
218 |
Q |
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| T |
2136278 |
tgaaaggatccatgtaagagaacttgagaactagtagagtttagtgtagtgtactagttttttcacttttttgtgttatgtgtgtgaatgatgataaagt |
2136377 |
T |
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| Q |
219 |
gggaatttaaagagttaggaaggagtttaatggtgaagtgaaaaaagggtcaaagaaagagttcagagattggttaaaaggttgaacctttttaaatgaa |
318 |
Q |
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| T |
2136378 |
gggaatttaaagagttaggaaggagtttaatg-tgaagtgaaaaaagggtcaaagaaagagttcagagattggttaaaaggttgaacctttttaaatgaa |
2136476 |
T |
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| Q |
319 |
ggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtgagaagaaatggtgaacatttatagag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136477 |
ggcgtgaaggttaaggaaaggatttgattctgtttctctcaaggctgtttcttaaacagaagagggggtgagtgagaagaaatggtgaacatttatagag |
2136576 |
T |
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| Q |
419 |
atgtgttattgtgtatttatgatgatgtc |
447 |
Q |
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| T |
2136577 |
atgtgttattgtgtatttatgatgatgtc |
2136605 |
T |
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