View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16212_low_7 (Length: 238)
Name: NF16212_low_7
Description: NF16212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16212_low_7 |
 | |
|
| [»] scaffold0209 (4 HSPs) |
| |
|
Alignment Details
Target: scaffold0209 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 9332 - 9553
Alignment:
| Q |
17 |
aacaatgatatataaactaaaacattatatctaatcaacgacgcaacaaaagttgaaagacgtggaatattagagttgcgatccaaactattttagaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9332 |
aacaatgatatataaactaaaacattatatctaatcaacgacgcaacaaaagttgaaagacgcggaatattagagttgcgatccaagctattttagaaaa |
9431 |
T |
|
| Q |
117 |
gcttctccttaatttacccctagcagttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcataga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9432 |
gcttctccttaatttacccctagcagttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcataga |
9531 |
T |
|
| Q |
217 |
ctgttaacaagattcgccaatt |
238 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
9532 |
ccgttaacaagattcgccaatt |
9553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 22786 - 23007
Alignment:
| Q |
17 |
aacaatgatatataaactaaaacattatatctaatcaacgacgcaacaaaagttgaaagacgtggaatattagagttgcgatccaaactattttagaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22786 |
aacaatgatatataaactaaaacattatatctaatcaacgacgcaacaaaagttgaaagacgcggaatattagagttgcgatccaagctattttagaaaa |
22885 |
T |
|
| Q |
117 |
gcttctccttaatttacccctagcagttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcataga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22886 |
gcttctccttaatttacccctagcagttctccaatgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcataga |
22985 |
T |
|
| Q |
217 |
ctgttaacaagattcgccaatt |
238 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
22986 |
ccgttaacaagattcgccaatt |
23007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 5202 - 5272
Alignment:
| Q |
17 |
aacaatgatatataaactaaaacattatatctaatcaacgacgcaacaaaagttgaaagacgtggaatatt |
87 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
5202 |
aacaatgatatataaactaaaacgttatatctaatcaacgacgcaacaaaagttgaaagacgcggattatt |
5272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 18656 - 18726
Alignment:
| Q |
17 |
aacaatgatatataaactaaaacattatatctaatcaacgacgcaacaaaagttgaaagacgtggaatatt |
87 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
18656 |
aacaatgatatataaactaaaacgttatatctaatcaacgacgcaacaaaagttgaaagacgcggattatt |
18726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 115065 - 115141
Alignment:
| Q |
151 |
tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaag |
227 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||| ||||| |||||| ||||||||||||| |||||||||| |
|
|
| T |
115065 |
tgttcattaagatcttccataagttggtaataacacgacgaatttgtcacaacatgtttgcatagattgttaacaag |
115141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 607400 - 607323
Alignment:
| Q |
151 |
tgttcatcaagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaaga |
228 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||||||||| |||||| ||||||| ||| | || |||||||| |
|
|
| T |
607400 |
tgttcattaagatcttccataagttggtaataacacgatgaattcgtcacaacatgtttggataaattgataacaaga |
607323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 178717 - 178649
Alignment:
| Q |
159 |
aagatcctccataagttggaaataacacgatgaattcatcacaatatgtttgcatagactgttaacaag |
227 |
Q |
| |
|
|||||| || ||||||||| ||||||| |||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
178717 |
aagatcttctataagttggtaataacatgatgaatttgtcacaacatgtttgcataggctgttaacaag |
178649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University